Model info
| Transcription factor | CXXC1 (GeneCards) | ||||||||
| Model | CXXC1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YGKTKKY | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 63 | ||||||||
| TF family | CpG-binding proteins {2.6.1} | ||||||||
| TF subfamily | CpG-binding protein (CXXC1, CFP1, CGBP, PCCX1, PHF18) {2.6.1.0.1} | ||||||||
| HGNC | HGNC:24343 | ||||||||
| EntrezGene | GeneID:30827 (SSTAR profile) | ||||||||
| UniProt ID | CXXC1_HUMAN | ||||||||
| UniProt AC | Q9P0U4 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CXXC1 expression | ||||||||
| ReMap ChIP-seq dataset list | CXXC1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.023 | 42.931 | 0.558 | 9.488 |
| 02 | 0.0 | 0.0 | 55.023 | 2.977 |
| 03 | 4.087 | 5.576 | 17.471 | 30.866 |
| 04 | 0.0 | 0.0 | 8.552 | 49.448 |
| 05 | 5.209 | 0.744 | 36.42 | 15.627 |
| 06 | 2.977 | 0.744 | 28.234 | 26.045 |
| 07 | 8.93 | 31.211 | 2.232 | 15.627 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.944 | 1.041 | -2.289 | -0.39 |
| 02 | -2.727 | -2.727 | 1.284 | -1.358 |
| 03 | -1.112 | -0.856 | 0.175 | 0.72 |
| 04 | -2.727 | -2.727 | -0.483 | 1.179 |
| 05 | -0.913 | -2.177 | 0.881 | 0.07 |
| 06 | -1.358 | -2.177 | 0.634 | 0.556 |
| 07 | -0.445 | 0.731 | -1.564 | 0.07 |