We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorCXXC1
(GeneCards)
ModelCXXC1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusYGKTKKY
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words63
TF familyCpG-binding proteins {2.6.1}
TF subfamilyCpG-binding protein (CXXC1, CFP1, CGBP, PCCX1, PHF18) {2.6.1.0.1}
HGNCHGNC:24343
EntrezGeneGeneID:30827
(SSTAR profile)
UniProt IDCXXC1_HUMAN
UniProt ACQ9P0U4
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.287835
0.0005 4.494199999999999
0.0001 5.29617
GTEx tissue expression atlas CXXC1 expression
ReMap ChIP-seq dataset list CXXC1 datasets
Motifs in JASPAR
PCM
ACGT
015.02342.9310.5589.488
020.00.055.0232.977
034.0875.57617.47130.866
040.00.08.55249.448
055.2090.74436.4215.627
062.9770.74428.23426.045
078.9331.2112.23215.627
PWM
ACGT
01-0.9441.041-2.289-0.39
02-2.727-2.7271.284-1.358
03-1.112-0.8560.1750.72
04-2.727-2.727-0.4831.179
05-0.913-2.1770.8810.07
06-1.358-2.1770.6340.556
07-0.4450.731-1.5640.07