Model info
| Transcription factor | DMRT1 (GeneCards) | ||||||||
| Model | DMRT1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hdGhhACAAWGTWdChv | ||||||||
| Best auROC (human) | 0.552 | ||||||||
| Best auROC (mouse) | 0.987 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | DMRT {2.5.1} | ||||||||
| TF subfamily | DMRT1 {2.5.1.0.1} | ||||||||
| HGNC | HGNC:2934 | ||||||||
| EntrezGene | GeneID:1761 (SSTAR profile) | ||||||||
| UniProt ID | DMRT1_HUMAN | ||||||||
| UniProt AC | Q9Y5R6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | DMRT1 expression | ||||||||
| ReMap ChIP-seq dataset list | DMRT1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 102.0 | 116.0 | 59.0 | 223.0 |
| 02 | 156.0 | 21.0 | 136.0 | 187.0 |
| 03 | 31.0 | 23.0 | 432.0 | 14.0 |
| 04 | 194.0 | 168.0 | 23.0 | 115.0 |
| 05 | 180.0 | 51.0 | 37.0 | 232.0 |
| 06 | 479.0 | 7.0 | 5.0 | 9.0 |
| 07 | 20.0 | 467.0 | 5.0 | 8.0 |
| 08 | 439.0 | 3.0 | 1.0 | 57.0 |
| 09 | 381.0 | 119.0 | 0.0 | 0.0 |
| 10 | 162.0 | 3.0 | 8.0 | 327.0 |
| 11 | 5.0 | 10.0 | 484.0 | 1.0 |
| 12 | 15.0 | 2.0 | 4.0 | 479.0 |
| 13 | 250.0 | 21.0 | 56.0 | 173.0 |
| 14 | 130.0 | 13.0 | 200.0 | 157.0 |
| 15 | 6.0 | 458.0 | 13.0 | 23.0 |
| 16 | 233.0 | 119.0 | 17.0 | 131.0 |
| 17 | 239.0 | 87.0 | 97.0 | 77.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.201 | -0.074 | -0.737 | 0.573 |
| 02 | 0.219 | -1.725 | 0.083 | 0.399 |
| 03 | -1.358 | -1.64 | 1.231 | -2.096 |
| 04 | 0.435 | 0.293 | -1.64 | -0.082 |
| 05 | 0.361 | -0.879 | -1.189 | 0.613 |
| 06 | 1.334 | -2.694 | -2.961 | -2.484 |
| 07 | -1.77 | 1.309 | -2.961 | -2.584 |
| 08 | 1.247 | -3.325 | -3.903 | -0.771 |
| 09 | 1.106 | -0.049 | -4.4 | -4.4 |
| 10 | 0.256 | -3.325 | -2.584 | 0.954 |
| 11 | -2.961 | -2.394 | 1.345 | -3.903 |
| 12 | -2.034 | -3.573 | -3.126 | 1.334 |
| 13 | 0.687 | -1.725 | -0.788 | 0.322 |
| 14 | 0.039 | -2.163 | 0.465 | 0.225 |
| 15 | -2.819 | 1.29 | -2.163 | -1.64 |
| 16 | 0.617 | -0.049 | -1.92 | 0.046 |
| 17 | 0.642 | -0.357 | -0.25 | -0.477 |