Transcription factor | Dmrtb1 | ||||||||
Model | DMRTB_MOUSE.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | bdGhWACWTTGTddCh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.899 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 500 | ||||||||
TF family | DMRT {2.5.1} | ||||||||
TF subfamily | DMRTB1 {2.5.1.0.6} | ||||||||
MGI | MGI:1927125 | ||||||||
EntrezGene | GeneID:56296 (SSTAR profile) | ||||||||
UniProt ID | DMRTB_MOUSE | ||||||||
UniProt AC | A2A9I7 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Dmrtb1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 60.0 | 121.0 | 119.0 | 200.0 |
02 | 99.0 | 48.0 | 148.0 | 205.0 |
03 | 18.0 | 12.0 | 433.0 | 37.0 |
04 | 150.0 | 217.0 | 21.0 | 112.0 |
05 | 133.0 | 61.0 | 14.0 | 292.0 |
06 | 430.0 | 32.0 | 16.0 | 22.0 |
07 | 5.0 | 475.0 | 13.0 | 7.0 |
08 | 331.0 | 21.0 | 13.0 | 135.0 |
09 | 0.0 | 2.0 | 130.0 | 368.0 |
10 | 64.0 | 11.0 | 18.0 | 407.0 |
11 | 19.0 | 25.0 | 424.0 | 32.0 |
12 | 23.0 | 21.0 | 13.0 | 443.0 |
13 | 245.0 | 40.0 | 63.0 | 152.0 |
14 | 100.0 | 27.0 | 169.0 | 204.0 |
15 | 33.0 | 416.0 | 21.0 | 30.0 |
16 | 162.0 | 168.0 | 33.0 | 137.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.721 | -0.032 | -0.049 | 0.465 |
02 | -0.23 | -0.938 | 0.167 | 0.49 |
03 | -1.868 | -2.234 | 1.234 | -1.189 |
04 | 0.18 | 0.546 | -1.725 | -0.108 |
05 | 0.061 | -0.705 | -2.096 | 0.841 |
06 | 1.227 | -1.328 | -1.975 | -1.681 |
07 | -2.961 | 1.326 | -2.163 | -2.694 |
08 | 0.966 | -1.725 | -2.163 | 0.076 |
09 | -4.4 | -3.573 | 0.039 | 1.072 |
10 | -0.658 | -2.311 | -1.868 | 1.172 |
11 | -1.818 | -1.561 | 1.213 | -1.328 |
12 | -1.64 | -1.725 | -2.163 | 1.256 |
13 | 0.667 | -1.114 | -0.673 | 0.193 |
14 | -0.22 | -1.489 | 0.298 | 0.485 |
15 | -1.298 | 1.194 | -1.725 | -1.389 |
16 | 0.256 | 0.293 | -1.298 | 0.091 |