Model info
| Transcription factor | Dmrtb1 | ||||||||
| Model | DMRTB_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdGhWACWTTGTddCh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.899 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | DMRT {2.5.1} | ||||||||
| TF subfamily | DMRTB1 {2.5.1.0.6} | ||||||||
| MGI | MGI:1927125 | ||||||||
| EntrezGene | GeneID:56296 (SSTAR profile) | ||||||||
| UniProt ID | DMRTB_MOUSE | ||||||||
| UniProt AC | A2A9I7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Dmrtb1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.0 | 121.0 | 119.0 | 200.0 |
| 02 | 99.0 | 48.0 | 148.0 | 205.0 |
| 03 | 18.0 | 12.0 | 433.0 | 37.0 |
| 04 | 150.0 | 217.0 | 21.0 | 112.0 |
| 05 | 133.0 | 61.0 | 14.0 | 292.0 |
| 06 | 430.0 | 32.0 | 16.0 | 22.0 |
| 07 | 5.0 | 475.0 | 13.0 | 7.0 |
| 08 | 331.0 | 21.0 | 13.0 | 135.0 |
| 09 | 0.0 | 2.0 | 130.0 | 368.0 |
| 10 | 64.0 | 11.0 | 18.0 | 407.0 |
| 11 | 19.0 | 25.0 | 424.0 | 32.0 |
| 12 | 23.0 | 21.0 | 13.0 | 443.0 |
| 13 | 245.0 | 40.0 | 63.0 | 152.0 |
| 14 | 100.0 | 27.0 | 169.0 | 204.0 |
| 15 | 33.0 | 416.0 | 21.0 | 30.0 |
| 16 | 162.0 | 168.0 | 33.0 | 137.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.721 | -0.032 | -0.049 | 0.465 |
| 02 | -0.23 | -0.938 | 0.167 | 0.49 |
| 03 | -1.868 | -2.234 | 1.234 | -1.189 |
| 04 | 0.18 | 0.546 | -1.725 | -0.108 |
| 05 | 0.061 | -0.705 | -2.096 | 0.841 |
| 06 | 1.227 | -1.328 | -1.975 | -1.681 |
| 07 | -2.961 | 1.326 | -2.163 | -2.694 |
| 08 | 0.966 | -1.725 | -2.163 | 0.076 |
| 09 | -4.4 | -3.573 | 0.039 | 1.072 |
| 10 | -0.658 | -2.311 | -1.868 | 1.172 |
| 11 | -1.818 | -1.561 | 1.213 | -1.328 |
| 12 | -1.64 | -1.725 | -2.163 | 1.256 |
| 13 | 0.667 | -1.114 | -0.673 | 0.193 |
| 14 | -0.22 | -1.489 | 0.298 | 0.485 |
| 15 | -1.298 | 1.194 | -1.725 | -1.389 |
| 16 | 0.256 | 0.293 | -1.298 | 0.091 |