Model info
| Transcription factor | DUXA (GeneCards) | ||||||||
| Model | DUXA_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGATTARvTYR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 2685 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | DUX {3.1.3.7} | ||||||||
| HGNC | HGNC:32179 | ||||||||
| EntrezGene | GeneID:503835 (SSTAR profile) | ||||||||
| UniProt ID | DUXA_HUMAN | ||||||||
| UniProt AC | A6NLW8 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | DUXA expression | ||||||||
| ReMap ChIP-seq dataset list | DUXA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.75 | 53.75 | 48.75 | 2514.75 |
| 02 | 52.0 | 5.0 | 2620.0 | 8.0 |
| 03 | 2668.5 | 6.5 | 7.5 | 2.5 |
| 04 | 4.25 | 0.25 | 2.25 | 2678.25 |
| 05 | 3.0 | 13.0 | 15.0 | 2654.0 |
| 06 | 2315.0 | 14.0 | 355.0 | 1.0 |
| 07 | 1435.0 | 268.0 | 962.0 | 20.0 |
| 08 | 1408.5 | 280.5 | 834.5 | 161.5 |
| 09 | 35.25 | 4.25 | 43.25 | 2602.25 |
| 10 | 166.0 | 803.0 | 154.0 | 1562.0 |
| 11 | 1771.5 | 197.5 | 365.5 | 350.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.268 | -2.492 | -2.586 | 1.319 |
| 02 | -2.524 | -4.57 | 1.36 | -4.212 |
| 03 | 1.378 | -4.375 | -4.264 | -5.014 |
| 04 | -4.684 | -5.713 | -5.071 | 1.382 |
| 05 | -4.908 | -3.806 | -3.68 | 1.372 |
| 06 | 1.236 | -3.741 | -0.634 | -5.422 |
| 07 | 0.758 | -0.914 | 0.359 | -3.422 |
| 08 | 0.74 | -0.868 | 0.217 | -1.415 |
| 09 | -2.895 | -4.684 | -2.7 | 1.353 |
| 10 | -1.388 | 0.179 | -1.462 | 0.843 |
| 11 | 0.969 | -1.216 | -0.605 | -0.647 |