We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorDUXA
(GeneCards)
ModelDUXA_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusTGATTARvTYR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2685
TF familyPaired-related HD factors {3.1.3}
TF subfamilyDUX {3.1.3.7}
HGNCHGNC:32179
EntrezGeneGeneID:503835
(SSTAR profile)
UniProt IDDUXA_HUMAN
UniProt ACA6NLW8
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.841325
0.0005 5.02776
0.0001 7.870004999999999
GTEx tissue expression atlas DUXA expression
ReMap ChIP-seq dataset list DUXA datasets
Motifs in JASPAR
PCM
ACGT
0167.7553.7548.752514.75
0252.05.02620.08.0
032668.56.57.52.5
044.250.252.252678.25
053.013.015.02654.0
062315.014.0355.01.0
071435.0268.0962.020.0
081408.5280.5834.5161.5
0935.254.2543.252602.25
10166.0803.0154.01562.0
111771.5197.5365.5350.5
PWM
ACGT
01-2.268-2.492-2.5861.319
02-2.524-4.571.36-4.212
031.378-4.375-4.264-5.014
04-4.684-5.713-5.0711.382
05-4.908-3.806-3.681.372
061.236-3.741-0.634-5.422
070.758-0.9140.359-3.422
080.74-0.8680.217-1.415
09-2.895-4.684-2.71.353
10-1.3880.179-1.4620.843
110.969-1.216-0.605-0.647