Model info
| Transcription factor | E2F1 (GeneCards) | ||||||||
| Model | E2F1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvndSGCGGGARvd | ||||||||
| Best auROC (human) | 0.919 | ||||||||
| Best auROC (mouse) | 0.958 | ||||||||
| Peak sets in benchmark (human) | 80 | ||||||||
| Peak sets in benchmark (mouse) | 21 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | E2F-related factors {3.3.2} | ||||||||
| TF subfamily | E2F {3.3.2.1} | ||||||||
| HGNC | HGNC:3113 | ||||||||
| EntrezGene | GeneID:1869 (SSTAR profile) | ||||||||
| UniProt ID | E2F1_HUMAN | ||||||||
| UniProt AC | Q01094 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | E2F1 expression | ||||||||
| ReMap ChIP-seq dataset list | E2F1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 164.0 | 80.0 | 189.0 | 67.0 |
| 02 | 118.0 | 100.0 | 226.0 | 56.0 |
| 03 | 136.0 | 105.0 | 145.0 | 114.0 |
| 04 | 95.0 | 51.0 | 233.0 | 121.0 |
| 05 | 41.0 | 100.0 | 352.0 | 7.0 |
| 06 | 9.0 | 3.0 | 483.0 | 5.0 |
| 07 | 28.0 | 461.0 | 2.0 | 9.0 |
| 08 | 8.0 | 4.0 | 479.0 | 9.0 |
| 09 | 11.0 | 41.0 | 445.0 | 3.0 |
| 10 | 34.0 | 17.0 | 445.0 | 4.0 |
| 11 | 428.0 | 10.0 | 45.0 | 17.0 |
| 12 | 327.0 | 32.0 | 136.0 | 5.0 |
| 13 | 200.0 | 70.0 | 183.0 | 47.0 |
| 14 | 136.0 | 82.0 | 198.0 | 84.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.269 | -0.439 | 0.409 | -0.613 |
| 02 | -0.057 | -0.22 | 0.587 | -0.788 |
| 03 | 0.083 | -0.172 | 0.147 | -0.091 |
| 04 | -0.271 | -0.879 | 0.617 | -0.032 |
| 05 | -1.09 | -0.22 | 1.027 | -2.694 |
| 06 | -2.484 | -3.325 | 1.343 | -2.961 |
| 07 | -1.454 | 1.296 | -3.573 | -2.484 |
| 08 | -2.584 | -3.126 | 1.334 | -2.484 |
| 09 | -2.311 | -1.09 | 1.261 | -3.325 |
| 10 | -1.27 | -1.92 | 1.261 | -3.126 |
| 11 | 1.222 | -2.394 | -1.0 | -1.92 |
| 12 | 0.954 | -1.328 | 0.083 | -2.961 |
| 13 | 0.465 | -0.57 | 0.377 | -0.958 |
| 14 | 0.083 | -0.415 | 0.455 | -0.392 |