We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorE2F1
(GeneCards)
ModelE2F1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvvndSGCGGGARvd
Best auROC (human)0.919
Best auROC (mouse)0.958
Peak sets in benchmark (human)80
Peak sets in benchmark (mouse)21
Aligned words500
TF familyE2F-related factors {3.3.2}
TF subfamilyE2F {3.3.2.1}
HGNCHGNC:3113
EntrezGeneGeneID:1869
(SSTAR profile)
UniProt IDE2F1_HUMAN
UniProt ACQ01094
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.0423099999999996
0.0005 3.95286
0.0001 5.90366
GTEx tissue expression atlas E2F1 expression
ReMap ChIP-seq dataset list E2F1 datasets
Motifs in JASPAR
MA0024.1 (E2F1; Homo sapiens)
MA0024.2 (E2F1; Homo sapiens)
MA0024.3 (E2F1; Homo sapiens)
PCM
ACGT
01164.080.0189.067.0
02118.0100.0226.056.0
03136.0105.0145.0114.0
0495.051.0233.0121.0
0541.0100.0352.07.0
069.03.0483.05.0
0728.0461.02.09.0
088.04.0479.09.0
0911.041.0445.03.0
1034.017.0445.04.0
11428.010.045.017.0
12327.032.0136.05.0
13200.070.0183.047.0
14136.082.0198.084.0
PWM
ACGT
010.269-0.4390.409-0.613
02-0.057-0.220.587-0.788
030.083-0.1720.147-0.091
04-0.271-0.8790.617-0.032
05-1.09-0.221.027-2.694
06-2.484-3.3251.343-2.961
07-1.4541.296-3.573-2.484
08-2.584-3.1261.334-2.484
09-2.311-1.091.261-3.325
10-1.27-1.921.261-3.126
111.222-2.394-1.0-1.92
120.954-1.3280.083-2.961
130.465-0.570.377-0.958
140.083-0.4150.455-0.392