Model info
| Transcription factor | E2f1 | ||||||||
| Model | E2F1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRGGCGGGRvv | ||||||||
| Best auROC (human) | 0.892 | ||||||||
| Best auROC (mouse) | 0.974 | ||||||||
| Peak sets in benchmark (human) | 80 | ||||||||
| Peak sets in benchmark (mouse) | 21 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | E2F-related factors {3.3.2} | ||||||||
| TF subfamily | E2F {3.3.2.1} | ||||||||
| MGI | MGI:101941 | ||||||||
| EntrezGene | GeneID:13555 (SSTAR profile) | ||||||||
| UniProt ID | E2F1_MOUSE | ||||||||
| UniProt AC | Q61501 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | E2f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 89.0 | 81.0 | 254.0 | 76.0 |
| 02 | 186.0 | 57.0 | 168.0 | 89.0 |
| 03 | 85.0 | 12.0 | 322.0 | 81.0 |
| 04 | 29.0 | 52.0 | 413.0 | 6.0 |
| 05 | 7.0 | 4.0 | 487.0 | 2.0 |
| 06 | 8.0 | 462.0 | 2.0 | 28.0 |
| 07 | 12.0 | 4.0 | 467.0 | 17.0 |
| 08 | 39.0 | 9.0 | 442.0 | 10.0 |
| 09 | 11.0 | 8.0 | 481.0 | 0.0 |
| 10 | 287.0 | 21.0 | 185.0 | 7.0 |
| 11 | 253.0 | 141.0 | 82.0 | 24.0 |
| 12 | 178.0 | 101.0 | 151.0 | 70.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.335 | -0.427 | 0.703 | -0.49 |
| 02 | 0.393 | -0.771 | 0.293 | -0.335 |
| 03 | -0.38 | -2.234 | 0.939 | -0.427 |
| 04 | -1.421 | -0.86 | 1.187 | -2.819 |
| 05 | -2.694 | -3.126 | 1.351 | -3.573 |
| 06 | -2.584 | 1.298 | -3.573 | -1.454 |
| 07 | -2.234 | -3.126 | 1.309 | -1.92 |
| 08 | -1.138 | -2.484 | 1.254 | -2.394 |
| 09 | -2.311 | -2.584 | 1.338 | -4.4 |
| 10 | 0.824 | -1.725 | 0.388 | -2.694 |
| 11 | 0.699 | 0.119 | -0.415 | -1.6 |
| 12 | 0.35 | -0.21 | 0.187 | -0.57 |