We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEGR1
(GeneCards)
ModelEGR1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensusnvbGYGKGGGYGGRRvbvbvv
Best auROC (human)0.991
Best auROC (mouse)0.986
Peak sets in benchmark (human)36
Peak sets in benchmark (mouse)12
Aligned words526
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilyEGR factors {2.3.1.3}
HGNCHGNC:3238
EntrezGeneGeneID:1958
(SSTAR profile)
UniProt IDEGR1_HUMAN
UniProt ACP18146
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.33919
0.0005 2.2961599999999995
0.0001 7.9851600000000005
GTEx tissue expression atlas EGR1 expression
ReMap ChIP-seq dataset list EGR1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.017.050.08.026.020.041.014.060.035.085.014.05.019.059.015.0
0215.026.048.024.09.018.020.044.027.044.079.085.09.08.016.018.0
032.04.054.00.06.06.079.05.010.03.0148.02.07.06.0154.04.0
044.012.02.07.03.010.00.06.065.0294.03.073.02.06.00.03.0
051.00.073.00.01.00.0321.00.00.00.05.00.00.00.089.00.0
060.00.01.01.00.00.00.00.01.01.0270.0216.00.00.00.00.0
070.00.01.00.00.00.01.00.019.01.0251.00.00.00.0217.00.0
080.00.019.00.00.00.01.00.00.01.0466.03.00.00.00.00.0
090.00.00.00.00.00.01.00.00.00.0486.00.00.00.03.00.0
100.00.00.00.00.00.00.00.072.0302.00.0116.00.00.00.00.0
111.00.071.00.00.04.0297.01.00.00.00.00.01.00.0115.00.0
120.01.01.00.01.01.02.00.012.014.0377.080.00.00.01.00.0
132.02.09.00.01.04.07.04.0121.029.0201.030.03.08.060.09.0
1423.09.087.08.07.05.019.012.063.021.0165.028.010.04.026.03.0
1515.032.051.05.015.011.08.05.059.0106.094.038.06.014.026.05.0
1613.023.047.012.014.061.054.034.036.048.065.030.04.019.020.010.0
1713.010.037.07.032.037.047.035.041.042.070.033.011.011.046.018.0
1822.014.041.020.020.026.037.017.035.030.097.038.06.020.056.011.0
1915.013.049.06.015.026.030.019.060.033.0113.025.04.015.050.017.0
2025.010.050.09.021.017.029.020.048.053.0108.033.04.016.028.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.326-0.5790.485-1.308-0.162-0.4190.289-0.7680.6660.1321.013-0.768-1.75-0.470.65-0.701
02-0.701-0.1620.445-0.24-1.195-0.523-0.4190.359-0.1240.3590.941.013-1.195-1.308-0.638-0.523
03-2.564-1.9560.562-4.383-1.58-1.580.94-1.75-1.094-2.2141.565-2.564-1.435-1.581.605-1.956
04-1.956-0.918-2.564-1.435-2.214-1.094-4.383-1.580.7462.251-2.2140.861-2.564-1.58-4.383-2.214
05-3.107-4.3830.861-4.383-3.107-4.3832.338-4.383-4.383-4.383-1.75-4.383-4.383-4.3831.059-4.383
06-4.383-4.383-3.107-3.107-4.383-4.383-4.383-4.383-3.107-3.1072.1651.943-4.383-4.383-4.383-4.383
07-4.383-4.383-3.107-4.383-4.383-4.383-3.107-4.383-0.47-3.1072.093-4.383-4.383-4.3831.947-4.383
08-4.383-4.383-0.47-4.383-4.383-4.383-3.107-4.383-4.383-3.1072.711-2.214-4.383-4.383-4.383-4.383
09-4.383-4.383-4.383-4.383-4.383-4.383-3.107-4.383-4.383-4.3832.753-4.383-4.383-4.383-2.214-4.383
10-4.383-4.383-4.383-4.383-4.383-4.383-4.383-4.3830.8482.277-4.3831.323-4.383-4.383-4.383-4.383
11-3.107-4.3830.834-4.383-4.383-1.9562.261-3.107-4.383-4.383-4.383-4.383-3.107-4.3831.314-4.383
12-4.383-3.107-3.107-4.383-3.107-3.107-2.564-4.383-0.918-0.7682.4990.952-4.383-4.383-3.107-4.383
13-2.564-2.564-1.195-4.383-3.107-1.956-1.435-1.9561.365-0.0541.871-0.02-2.214-1.3080.666-1.195
14-0.282-1.1951.036-1.308-1.435-1.75-0.47-0.9180.715-0.3721.674-0.088-1.094-1.956-0.162-2.214
15-0.7010.0430.505-1.75-0.701-1.002-1.308-1.750.651.2331.1130.213-1.58-0.768-0.162-1.75
16-0.84-0.2820.424-0.918-0.7680.6830.5620.1030.160.4450.746-0.02-1.956-0.47-0.419-1.094
17-0.84-1.0940.187-1.4350.0430.1870.4240.1320.2890.3120.820.074-1.002-1.0020.403-0.523
18-0.326-0.7680.289-0.419-0.419-0.1620.187-0.5790.132-0.021.1440.213-1.58-0.4190.598-1.002
19-0.701-0.840.465-1.58-0.701-0.162-0.02-0.470.6660.0741.296-0.2-1.956-0.7010.485-0.579
20-0.2-1.0940.485-1.195-0.372-0.579-0.054-0.4190.4450.5431.2510.074-1.956-0.638-0.088-0.47