We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEGR1
(GeneCards)
ModelEGR1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvnvdGhGKGGGYGKndv
Best auROC (human)0.989
Best auROC (mouse)0.981
Peak sets in benchmark (human)36
Peak sets in benchmark (mouse)12
Aligned words500
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilyEGR factors {2.3.1.3}
HGNCHGNC:3238
EntrezGeneGeneID:1958
(SSTAR profile)
UniProt IDEGR1_HUMAN
UniProt ACP18146
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.70186
0.0005 4.59041
0.0001 6.426159999999999
GTEx tissue expression atlas EGR1 expression
ReMap ChIP-seq dataset list EGR1 datasets
Motifs in JASPAR
PCM
ACGT
01116.0124.0205.055.0
02160.064.0159.0117.0
03139.090.0230.041.0
04118.056.0177.0149.0
0556.015.0404.025.0
06118.0253.023.0106.0
0728.017.0435.020.0
0816.02.0205.0277.0
0946.01.0446.07.0
108.02.0479.011.0
1112.016.0465.07.0
12110.0238.02.0150.0
1344.05.0421.030.0
1455.011.0348.086.0
15169.064.0203.064.0
16156.041.0228.075.0
17132.091.0218.059.0
PWM
ACGT
01-0.074-0.0080.49-0.805
020.244-0.6580.238-0.065
030.105-0.3240.604-1.09
04-0.057-0.7880.3440.174
05-0.788-2.0341.165-1.561
06-0.0570.699-1.64-0.163
07-1.454-1.921.238-1.77
08-1.975-3.5730.490.789
09-0.979-3.9031.263-2.694
10-2.584-3.5731.334-2.311
11-2.234-1.9751.305-2.694
12-0.1260.638-3.5730.18
13-1.022-2.9611.206-1.389
14-0.805-2.3111.016-0.368
150.298-0.6580.48-0.658
160.219-1.090.595-0.503
170.054-0.3130.551-0.737