Transcription factor | EGR1 (GeneCards) | ||||||||
Model | EGR1_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 17 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vnvdGhGKGGGYGKndv | ||||||||
Best auROC (human) | 0.989 | ||||||||
Best auROC (mouse) | 0.981 | ||||||||
Peak sets in benchmark (human) | 36 | ||||||||
Peak sets in benchmark (mouse) | 12 | ||||||||
Aligned words | 500 | ||||||||
TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
TF subfamily | EGR factors {2.3.1.3} | ||||||||
HGNC | HGNC:3238 | ||||||||
EntrezGene | GeneID:1958 (SSTAR profile) | ||||||||
UniProt ID | EGR1_HUMAN | ||||||||
UniProt AC | P18146 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | EGR1 expression | ||||||||
ReMap ChIP-seq dataset list | EGR1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 116.0 | 124.0 | 205.0 | 55.0 |
02 | 160.0 | 64.0 | 159.0 | 117.0 |
03 | 139.0 | 90.0 | 230.0 | 41.0 |
04 | 118.0 | 56.0 | 177.0 | 149.0 |
05 | 56.0 | 15.0 | 404.0 | 25.0 |
06 | 118.0 | 253.0 | 23.0 | 106.0 |
07 | 28.0 | 17.0 | 435.0 | 20.0 |
08 | 16.0 | 2.0 | 205.0 | 277.0 |
09 | 46.0 | 1.0 | 446.0 | 7.0 |
10 | 8.0 | 2.0 | 479.0 | 11.0 |
11 | 12.0 | 16.0 | 465.0 | 7.0 |
12 | 110.0 | 238.0 | 2.0 | 150.0 |
13 | 44.0 | 5.0 | 421.0 | 30.0 |
14 | 55.0 | 11.0 | 348.0 | 86.0 |
15 | 169.0 | 64.0 | 203.0 | 64.0 |
16 | 156.0 | 41.0 | 228.0 | 75.0 |
17 | 132.0 | 91.0 | 218.0 | 59.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.074 | -0.008 | 0.49 | -0.805 |
02 | 0.244 | -0.658 | 0.238 | -0.065 |
03 | 0.105 | -0.324 | 0.604 | -1.09 |
04 | -0.057 | -0.788 | 0.344 | 0.174 |
05 | -0.788 | -2.034 | 1.165 | -1.561 |
06 | -0.057 | 0.699 | -1.64 | -0.163 |
07 | -1.454 | -1.92 | 1.238 | -1.77 |
08 | -1.975 | -3.573 | 0.49 | 0.789 |
09 | -0.979 | -3.903 | 1.263 | -2.694 |
10 | -2.584 | -3.573 | 1.334 | -2.311 |
11 | -2.234 | -1.975 | 1.305 | -2.694 |
12 | -0.126 | 0.638 | -3.573 | 0.18 |
13 | -1.022 | -2.961 | 1.206 | -1.389 |
14 | -0.805 | -2.311 | 1.016 | -0.368 |
15 | 0.298 | -0.658 | 0.48 | -0.658 |
16 | 0.219 | -1.09 | 0.595 | -0.503 |
17 | 0.054 | -0.313 | 0.551 | -0.737 |