Model info
| Transcription factor | Egr1 | ||||||||
| Model | EGR1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbGYGKGGGYGGdd | ||||||||
| Best auROC (human) | 0.988 | ||||||||
| Best auROC (mouse) | 0.985 | ||||||||
| Peak sets in benchmark (human) | 36 | ||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 492 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | EGR factors {2.3.1.3} | ||||||||
| MGI | MGI:95295 | ||||||||
| EntrezGene | GeneID:13653 (SSTAR profile) | ||||||||
| UniProt ID | EGR1_MOUSE | ||||||||
| UniProt AC | P08046 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Egr1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 112.0 | 95.0 | 232.0 | 53.0 |
| 02 | 67.0 | 85.0 | 167.0 | 173.0 |
| 03 | 25.0 | 19.0 | 441.0 | 7.0 |
| 04 | 76.0 | 330.0 | 6.0 | 80.0 |
| 05 | 1.0 | 0.0 | 486.0 | 5.0 |
| 06 | 2.0 | 1.0 | 268.0 | 221.0 |
| 07 | 17.0 | 1.0 | 474.0 | 0.0 |
| 08 | 0.0 | 2.0 | 487.0 | 3.0 |
| 09 | 0.0 | 0.0 | 492.0 | 0.0 |
| 10 | 73.0 | 301.0 | 0.0 | 118.0 |
| 11 | 0.0 | 3.0 | 487.0 | 2.0 |
| 12 | 12.0 | 14.0 | 383.0 | 83.0 |
| 13 | 129.0 | 42.0 | 270.0 | 51.0 |
| 14 | 108.0 | 48.0 | 284.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.092 | -0.255 | 0.629 | -0.826 |
| 02 | -0.597 | -0.364 | 0.303 | 0.338 |
| 03 | -1.546 | -1.802 | 1.268 | -2.679 |
| 04 | -0.474 | 0.979 | -2.803 | -0.423 |
| 05 | -3.889 | -4.387 | 1.365 | -2.945 |
| 06 | -3.558 | -3.889 | 0.772 | 0.58 |
| 07 | -1.904 | -3.889 | 1.34 | -4.387 |
| 08 | -4.387 | -3.558 | 1.367 | -3.31 |
| 09 | -4.387 | -4.387 | 1.377 | -4.387 |
| 10 | -0.513 | 0.888 | -4.387 | -0.041 |
| 11 | -4.387 | -3.31 | 1.367 | -3.558 |
| 12 | -2.218 | -2.081 | 1.127 | -0.387 |
| 13 | 0.047 | -1.051 | 0.779 | -0.863 |
| 14 | -0.128 | -0.922 | 0.83 | -0.844 |