We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEGR2
(GeneCards)
ModelEGR2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
1
ConsensusdvdGhGKGGGhGKddv
Best auROC (human)0.988
Best auROC (mouse)0.98
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)25
Aligned words505
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilyEGR factors {2.3.1.3}
HGNCHGNC:3239
EntrezGeneGeneID:1959
(SSTAR profile)
UniProt IDEGR2_HUMAN
UniProt ACP11161
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.33796
0.0005 4.32961
0.0001 6.39606
GTEx tissue expression atlas EGR2 expression
ReMap ChIP-seq dataset list EGR2 datasets
Motifs in JASPAR
PCM
ACGT
0197.072.0228.0101.0
02140.086.0226.046.0
0394.050.0186.0168.0
0431.033.0423.011.0
05122.0182.029.0165.0
063.09.0483.03.0
076.05.0173.0314.0
0881.02.0405.010.0
0912.05.0460.021.0
1012.09.0475.02.0
11160.0178.06.0154.0
1216.03.0454.025.0
1334.014.0355.095.0
14149.047.0229.073.0
15110.040.0261.087.0
1694.082.0257.065.0
PWM
ACGT
01-0.246-0.5390.599-0.206
020.116-0.3640.591-0.975
03-0.277-0.8940.3970.296
04-1.354-1.2941.214-2.307
05-0.020.376-1.4170.279
06-3.321-2.481.347-3.321
07-2.815-2.9570.3260.918
08-0.423-3.5691.171-2.39
09-2.23-2.9571.298-1.721
10-2.23-2.481.33-3.569
110.2480.354-2.8150.21
12-1.971-3.3211.285-1.558
13-1.266-2.0921.04-0.267
140.178-0.9540.604-0.525
15-0.122-1.110.734-0.353
16-0.277-0.4110.718-0.639