Model info
| Transcription factor | Egr2 | ||||||||
| Model | EGR2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bShGKGGGhGKddv | ||||||||
| Best auROC (human) | 0.948 | ||||||||
| Best auROC (mouse) | 0.995 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 506 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | EGR factors {2.3.1.3} | ||||||||
| MGI | MGI:95296 | ||||||||
| EntrezGene | GeneID:13654 (SSTAR profile) | ||||||||
| UniProt ID | EGR2_MOUSE | ||||||||
| UniProt AC | P08152 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Egr2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 69.0 | 71.0 | 209.0 | 151.0 |
| 02 | 47.0 | 67.0 | 364.0 | 22.0 |
| 03 | 111.0 | 199.0 | 34.0 | 156.0 |
| 04 | 10.0 | 6.0 | 475.0 | 9.0 |
| 05 | 4.0 | 7.0 | 148.0 | 341.0 |
| 06 | 31.0 | 2.0 | 463.0 | 4.0 |
| 07 | 1.0 | 2.0 | 492.0 | 5.0 |
| 08 | 1.0 | 9.0 | 490.0 | 0.0 |
| 09 | 124.0 | 209.0 | 7.0 | 160.0 |
| 10 | 14.0 | 8.0 | 462.0 | 16.0 |
| 11 | 36.0 | 4.0 | 365.0 | 95.0 |
| 12 | 126.0 | 48.0 | 271.0 | 55.0 |
| 13 | 94.0 | 54.0 | 264.0 | 88.0 |
| 14 | 112.0 | 85.0 | 250.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.584 | -0.556 | 0.509 | 0.187 |
| 02 | -0.958 | -0.613 | 1.061 | -1.681 |
| 03 | -0.117 | 0.46 | -1.27 | 0.219 |
| 04 | -2.394 | -2.819 | 1.326 | -2.484 |
| 05 | -3.126 | -2.694 | 0.167 | 0.996 |
| 06 | -1.358 | -3.573 | 1.3 | -3.126 |
| 07 | -3.903 | -3.573 | 1.361 | -2.961 |
| 08 | -3.903 | -2.484 | 1.357 | -4.4 |
| 09 | -0.008 | 0.509 | -2.694 | 0.244 |
| 10 | -2.096 | -2.584 | 1.298 | -1.975 |
| 11 | -1.215 | -3.126 | 1.063 | -0.271 |
| 12 | 0.008 | -0.938 | 0.767 | -0.805 |
| 13 | -0.281 | -0.823 | 0.741 | -0.346 |
| 14 | -0.108 | -0.38 | 0.687 | -0.841 |