We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEgr2
ModelEGR2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusbShGKGGGhGKddv
Best auROC (human)0.948
Best auROC (mouse)0.995
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)25
Aligned words506
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilyEGR factors {2.3.1.3}
MGIMGI:95296
EntrezGeneGeneID:13654
(SSTAR profile)
UniProt IDEGR2_MOUSE
UniProt ACP08152
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.2530099999999997
0.0005 4.29091
0.0001 6.42911
GTEx tissue expression atlas Egr2 expression
Motifs in JASPAR
PCM
ACGT
0169.071.0209.0151.0
0247.067.0364.022.0
03111.0199.034.0156.0
0410.06.0475.09.0
054.07.0148.0341.0
0631.02.0463.04.0
071.02.0492.05.0
081.09.0490.00.0
09124.0209.07.0160.0
1014.08.0462.016.0
1136.04.0365.095.0
12126.048.0271.055.0
1394.054.0264.088.0
14112.085.0250.053.0
PWM
ACGT
01-0.584-0.5560.5090.187
02-0.958-0.6131.061-1.681
03-0.1170.46-1.270.219
04-2.394-2.8191.326-2.484
05-3.126-2.6940.1670.996
06-1.358-3.5731.3-3.126
07-3.903-3.5731.361-2.961
08-3.903-2.4841.357-4.4
09-0.0080.509-2.6940.244
10-2.096-2.5841.298-1.975
11-1.215-3.1261.063-0.271
120.008-0.9380.767-0.805
13-0.281-0.8230.741-0.346
14-0.108-0.380.687-0.841