Model info
| Transcription factor | Egr2 | ||||||||
| Model | EGR2_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vdGhGKGGGhGKvdvddd | ||||||||
| Best auROC (human) | 0.942 | ||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 508 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | EGR factors {2.3.1.3} | ||||||||
| MGI | MGI:95296 | ||||||||
| EntrezGene | GeneID:13654 (SSTAR profile) | ||||||||
| UniProt ID | EGR2_MOUSE | ||||||||
| UniProt AC | P08152 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Egr2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 178.0 | 74.0 | 205.0 | 42.0 |
| 02 | 95.0 | 39.0 | 229.0 | 136.0 |
| 03 | 42.0 | 29.0 | 412.0 | 16.0 |
| 04 | 155.0 | 178.0 | 21.0 | 145.0 |
| 05 | 21.0 | 22.0 | 441.0 | 15.0 |
| 06 | 17.0 | 11.0 | 203.0 | 268.0 |
| 07 | 79.0 | 2.0 | 394.0 | 24.0 |
| 08 | 15.0 | 3.0 | 453.0 | 28.0 |
| 09 | 15.0 | 7.0 | 475.0 | 2.0 |
| 10 | 222.0 | 132.0 | 7.0 | 138.0 |
| 11 | 24.0 | 1.0 | 449.0 | 25.0 |
| 12 | 31.0 | 19.0 | 365.0 | 84.0 |
| 13 | 159.0 | 67.0 | 215.0 | 58.0 |
| 14 | 144.0 | 28.0 | 239.0 | 88.0 |
| 15 | 96.0 | 67.0 | 282.0 | 54.0 |
| 16 | 133.0 | 63.0 | 199.0 | 104.0 |
| 17 | 87.0 | 52.0 | 293.0 | 67.0 |
| 18 | 100.0 | 64.0 | 265.0 | 70.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.352 | -0.514 | 0.492 | -1.065 |
| 02 | -0.269 | -1.136 | 0.602 | 0.085 |
| 03 | -1.065 | -1.419 | 1.186 | -1.973 |
| 04 | 0.215 | 0.352 | -1.723 | 0.149 |
| 05 | -1.723 | -1.679 | 1.254 | -2.032 |
| 06 | -1.918 | -2.309 | 0.482 | 0.758 |
| 07 | -0.45 | -3.571 | 1.142 | -1.598 |
| 08 | -2.032 | -3.323 | 1.281 | -1.452 |
| 09 | -2.032 | -2.692 | 1.328 | -3.571 |
| 10 | 0.571 | 0.056 | -2.692 | 0.1 |
| 11 | -1.598 | -3.901 | 1.272 | -1.56 |
| 12 | -1.356 | -1.816 | 1.065 | -0.39 |
| 13 | 0.24 | -0.611 | 0.539 | -0.752 |
| 14 | 0.142 | -1.452 | 0.644 | -0.344 |
| 15 | -0.258 | -0.611 | 0.809 | -0.821 |
| 16 | 0.063 | -0.671 | 0.462 | -0.179 |
| 17 | -0.355 | -0.858 | 0.847 | -0.611 |
| 18 | -0.218 | -0.656 | 0.747 | -0.568 |