We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEGR4
(GeneCards)
ModelEGR4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusGGSGGYAGGGM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilyEGR factors {2.3.1.3}
HGNCHGNC:3241
EntrezGeneGeneID:1961
(SSTAR profile)
UniProt IDEGR4_HUMAN
UniProt ACQ05215
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.94428
0.0005 4.654295
0.0001 6.2848500000000005
GTEx tissue expression atlas EGR4 expression
ReMap ChIP-seq dataset list EGR4 datasets
Motifs in JASPAR
PCM
ACGT
010.1260.1265.6230.126
020.00.06.00.0
030.03.0822.0120.906
040.00.06.00.0
050.00.06.00.0
060.03.5850.5031.912
073.4850.02.5150.0
080.00.05.0940.906
090.00.5035.4970.0
100.00.06.00.0
111.613.1830.6040.604
PWM
ACGT
01-1.222-1.2221.137-1.222
02-1.47-1.471.197-1.47
03-1.470.5950.233-0.364
04-1.47-1.471.197-1.47
05-1.47-1.471.197-1.47
06-1.470.728-0.7170.192
070.703-1.470.42-1.47
08-1.47-1.471.046-0.364
09-1.47-0.7171.116-1.47
10-1.47-1.471.197-1.47
110.0550.623-0.616-0.616