We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorELK1
(GeneCards)
ModelELK1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusvCCGGAAGTKv
Best auROC (human)0.98
Best auROC (mouse)0.683
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)7
Aligned words500
TF familyEts-related factors {3.5.2}
TF subfamilyElk-like factors {3.5.2.2}
HGNCHGNC:3321
EntrezGeneGeneID:2002
(SSTAR profile)
UniProt IDELK1_HUMAN
UniProt ACP19419
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.3296599999999996
0.0005 4.37537
0.0001 6.45664
GTEx tissue expression atlas ELK1 expression
ReMap ChIP-seq dataset list ELK1 datasets
Motifs in JASPAR
MA0028.1 (ELK1; Homo sapiens)
MA0028.2 (ELK1; Homo sapiens)
PCM
ACGT
01252.065.0131.052.0
0260.0392.045.03.0
0362.0420.01.017.0
044.02.0493.01.0
053.01.0496.00.0
06499.01.00.00.0
07493.00.02.05.0
0840.015.0413.032.0
0914.084.014.0388.0
1058.055.0322.065.0
11159.0127.0181.033.0
PWM
ACGT
010.695-0.6430.046-0.86
02-0.7211.135-1.0-3.325
03-0.6891.203-3.903-1.92
04-3.126-3.5731.363-3.903
05-3.325-3.9031.369-4.4
061.375-3.903-4.4-4.4
071.363-4.4-3.573-2.961
08-1.114-2.0341.187-1.328
09-2.096-0.392-2.0961.124
10-0.754-0.8050.939-0.643
110.2380.0160.366-1.298