Model info
| Transcription factor | Elk1 | ||||||||
| Model | ELK1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vSCGGAAGYdv | ||||||||
| Best auROC (human) | 0.975 | ||||||||
| Best auROC (mouse) | 0.715 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Elk-like factors {3.5.2.2} | ||||||||
| MGI | MGI:101833 | ||||||||
| EntrezGene | GeneID:13712 (SSTAR profile) | ||||||||
| UniProt ID | ELK1_MOUSE | ||||||||
| UniProt AC | P41969 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Elk1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 234.0 | 74.0 | 138.0 | 54.0 |
| 02 | 57.0 | 368.0 | 73.0 | 2.0 |
| 03 | 71.0 | 405.0 | 3.0 | 21.0 |
| 04 | 1.0 | 0.0 | 496.0 | 3.0 |
| 05 | 1.0 | 0.0 | 499.0 | 0.0 |
| 06 | 496.0 | 3.0 | 0.0 | 1.0 |
| 07 | 490.0 | 1.0 | 1.0 | 8.0 |
| 08 | 42.0 | 20.0 | 411.0 | 27.0 |
| 09 | 17.0 | 85.0 | 24.0 | 374.0 |
| 10 | 78.0 | 60.0 | 291.0 | 71.0 |
| 11 | 141.0 | 117.0 | 197.0 | 45.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.621 | -0.516 | 0.098 | -0.823 |
| 02 | -0.771 | 1.072 | -0.529 | -3.573 |
| 03 | -0.556 | 1.167 | -3.325 | -1.725 |
| 04 | -3.903 | -4.4 | 1.369 | -3.325 |
| 05 | -3.903 | -4.4 | 1.375 | -4.4 |
| 06 | 1.369 | -3.325 | -4.4 | -3.903 |
| 07 | 1.357 | -3.903 | -3.903 | -2.584 |
| 08 | -1.067 | -1.77 | 1.182 | -1.489 |
| 09 | -1.92 | -0.38 | -1.6 | 1.088 |
| 10 | -0.464 | -0.721 | 0.838 | -0.556 |
| 11 | 0.119 | -0.065 | 0.45 | -1.0 |