Model info
| Transcription factor | EMX1 (GeneCards) | ||||||||
| Model | EMX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATTARbbhWh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 31003 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | EMX {3.1.2.6} | ||||||||
| HGNC | HGNC:3340 | ||||||||
| EntrezGene | GeneID:2016 (SSTAR profile) | ||||||||
| UniProt ID | EMX1_HUMAN | ||||||||
| UniProt AC | Q04741 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | EMX1 expression | ||||||||
| ReMap ChIP-seq dataset list | EMX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1036.0 | 4296.0 | 863.0 | 24293.0 |
| 02 | 25220.25 | 4817.25 | 220.25 | 230.25 |
| 03 | 30169.0 | 130.0 | 80.0 | 109.0 |
| 04 | 70.75 | 58.75 | 68.75 | 30289.75 |
| 05 | 38.0 | 55.0 | 182.0 | 30213.0 |
| 06 | 30282.0 | 45.0 | 106.0 | 55.0 |
| 07 | 6944.5 | 4326.5 | 19030.5 | 186.5 |
| 08 | 1441.0 | 12737.0 | 5567.0 | 10743.0 |
| 09 | 4323.25 | 4361.25 | 6394.25 | 15409.25 |
| 10 | 15949.25 | 4603.25 | 3079.25 | 6856.25 |
| 11 | 18268.5 | 3746.5 | 2747.5 | 5725.5 |
| 12 | 8504.75 | 3374.75 | 2639.75 | 15968.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.994 | -0.573 | -2.176 | 1.159 |
| 02 | 1.196 | -0.459 | -3.533 | -3.489 |
| 03 | 1.376 | -4.052 | -4.525 | -4.224 |
| 04 | -4.644 | -4.823 | -4.672 | 1.38 |
| 05 | -5.236 | -4.886 | -3.721 | 1.377 |
| 06 | 1.379 | -5.077 | -4.252 | -4.886 |
| 07 | -0.093 | -0.566 | 0.915 | -3.697 |
| 08 | -1.664 | 0.513 | -0.314 | 0.343 |
| 09 | -0.567 | -0.558 | -0.176 | 0.704 |
| 10 | 0.738 | -0.504 | -0.906 | -0.106 |
| 11 | 0.874 | -0.71 | -1.02 | -0.286 |
| 12 | 0.11 | -0.814 | -1.06 | 0.739 |