Model info
| Transcription factor | EOMES (GeneCards) | ||||||||
| Model | EOMES_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddvARGTGhbAR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 376 | ||||||||
| TF family | TBrain-related factors {6.5.2} | ||||||||
| TF subfamily | TBR-2 (EOMES) {6.5.2.0.2} | ||||||||
| HGNC | HGNC:3372 | ||||||||
| EntrezGene | GeneID:8320 (SSTAR profile) | ||||||||
| UniProt ID | EOMES_HUMAN | ||||||||
| UniProt AC | O95936 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | EOMES expression | ||||||||
| ReMap ChIP-seq dataset list | EOMES datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 172.786 | 40.018 | 107.732 | 54.464 |
| 02 | 95.221 | 19.083 | 174.539 | 86.157 |
| 03 | 82.584 | 70.822 | 167.723 | 53.871 |
| 04 | 312.96 | 3.034 | 25.907 | 33.099 |
| 05 | 99.653 | 0.0 | 254.445 | 20.902 |
| 06 | 7.823 | 31.493 | 331.731 | 3.954 |
| 07 | 8.829 | 1.035 | 5.802 | 359.334 |
| 08 | 0.0 | 2.016 | 372.012 | 0.972 |
| 09 | 136.465 | 67.907 | 10.051 | 160.577 |
| 10 | 19.89 | 63.273 | 128.634 | 163.203 |
| 11 | 336.998 | 3.057 | 12.051 | 22.894 |
| 12 | 246.346 | 13.177 | 98.572 | 16.904 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.604 | -0.831 | 0.137 | -0.532 |
| 02 | 0.015 | -1.533 | 0.614 | -0.083 |
| 03 | -0.125 | -0.275 | 0.575 | -0.543 |
| 04 | 1.194 | -3.049 | -1.246 | -1.013 |
| 05 | 0.06 | -4.163 | 0.989 | -1.448 |
| 06 | -2.326 | -1.061 | 1.252 | -2.863 |
| 07 | -2.223 | -3.633 | -2.571 | 1.332 |
| 08 | -4.163 | -3.304 | 1.367 | -3.659 |
| 09 | 0.371 | -0.317 | -2.111 | 0.532 |
| 10 | -1.494 | -0.386 | 0.312 | 0.548 |
| 11 | 1.268 | -3.044 | -1.951 | -1.363 |
| 12 | 0.956 | -1.871 | 0.049 | -1.645 |