We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorEPAS1
(GeneCards)
ModelEPAS1_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusvdCACGThbnhn
Best auROC (human)0.892
Best auROC (mouse)
Peak sets in benchmark (human)24
Peak sets in benchmark (mouse)
Aligned words503
TF familyPAS domain factors {1.2.5}
TF subfamilyAhr-like factors {1.2.5.1}
HGNCHGNC:3374
EntrezGeneGeneID:2034
(SSTAR profile)
UniProt IDEPAS1_HUMAN
UniProt ACQ99814
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.159369999999999
0.0005 7.901425
0.0001 11.374865
GTEx tissue expression atlas EPAS1 expression
ReMap ChIP-seq dataset list EPAS1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.07.061.020.027.015.017.033.018.08.070.0123.05.08.067.09.0
020.062.00.00.00.038.00.00.01.0214.00.00.00.0185.00.00.0
030.00.01.00.0497.01.01.00.00.00.00.00.00.00.00.00.0
040.0496.00.01.00.01.00.00.00.02.00.00.00.00.00.00.0
050.00.00.00.035.05.0456.03.00.00.00.00.01.00.00.00.0
060.05.01.030.00.02.00.03.04.048.015.0389.00.00.00.03.0
073.01.00.00.038.07.01.09.06.04.05.01.0223.0107.031.064.0
0822.0120.096.032.09.069.06.035.00.018.06.013.04.026.018.026.0
097.010.014.04.078.081.026.048.013.051.042.020.012.042.027.025.0
1016.062.022.010.059.061.012.052.020.068.014.07.014.052.015.016.0
1117.040.033.019.095.073.026.049.010.016.023.014.05.029.035.016.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.938-1.4540.663-0.439-0.144-0.721-0.5990.054-0.543-1.3280.81.361-1.77-1.3280.756-1.215
02-4.40.679-4.4-4.4-4.40.193-4.4-4.4-3.1261.913-4.4-4.4-4.41.768-4.4-4.4
03-4.4-4.4-3.126-4.42.755-3.126-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
04-4.42.753-4.4-3.126-4.4-3.126-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4
05-4.4-4.4-4.4-4.40.112-1.772.669-2.234-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4
06-4.4-1.77-3.126-0.04-4.4-2.584-4.4-2.234-1.9750.425-0.7212.51-4.4-4.4-4.4-2.234
07-2.234-3.126-4.4-4.40.193-1.454-3.126-1.215-1.6-1.975-1.77-3.1261.9551.222-0.0080.711
08-0.3461.3361.1140.023-1.2150.785-1.60.112-4.4-0.543-1.6-0.86-1.975-0.181-0.543-0.181
09-1.454-1.114-0.788-1.9750.9070.945-0.1810.425-0.860.4850.293-0.439-0.9380.293-0.144-0.22
10-0.6580.679-0.346-1.1140.630.663-0.9380.504-0.4390.771-0.788-1.454-0.7880.504-0.721-0.658
11-0.5990.2440.054-0.491.1040.841-0.1810.445-1.114-0.658-0.302-0.788-1.77-0.0740.112-0.658