Transcription factor | Esr1 | ||||||||
Model | ESR1_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | RKGWCASCvTGhYCY | ||||||||
Best auROC (human) | 0.966 | ||||||||
Best auROC (mouse) | 0.993 | ||||||||
Peak sets in benchmark (human) | 432 | ||||||||
Peak sets in benchmark (mouse) | 58 | ||||||||
Aligned words | 500 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
MGI | MGI:1352467 | ||||||||
EntrezGene | GeneID:13982 (SSTAR profile) | ||||||||
UniProt ID | ESR1_MOUSE | ||||||||
UniProt AC | P19785 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Esr1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 279.0 | 23.0 | 153.0 | 45.0 |
02 | 47.0 | 3.0 | 384.0 | 66.0 |
03 | 49.0 | 36.0 | 402.0 | 13.0 |
04 | 121.0 | 35.0 | 54.0 | 290.0 |
05 | 1.0 | 425.0 | 59.0 | 15.0 |
06 | 464.0 | 3.0 | 23.0 | 10.0 |
07 | 37.0 | 281.0 | 141.0 | 41.0 |
08 | 219.0 | 281.0 | 0.0 | 0.0 |
09 | 84.0 | 238.0 | 123.0 | 55.0 |
10 | 38.0 | 26.0 | 7.0 | 429.0 |
11 | 13.0 | 14.0 | 469.0 | 4.0 |
12 | 275.0 | 79.0 | 37.0 | 109.0 |
13 | 33.0 | 397.0 | 22.0 | 48.0 |
14 | 52.0 | 409.0 | 0.0 | 39.0 |
15 | 35.0 | 188.0 | 27.0 | 250.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.796 | -1.64 | 0.2 | -1.0 |
02 | -0.958 | -3.325 | 1.114 | -0.628 |
03 | -0.918 | -1.215 | 1.16 | -2.163 |
04 | -0.032 | -1.242 | -0.823 | 0.835 |
05 | -3.903 | 1.215 | -0.737 | -2.034 |
06 | 1.303 | -3.325 | -1.64 | -2.394 |
07 | -1.189 | 0.803 | 0.119 | -1.09 |
08 | 0.555 | 0.803 | -4.4 | -4.4 |
09 | -0.392 | 0.638 | -0.016 | -0.805 |
10 | -1.163 | -1.525 | -2.694 | 1.224 |
11 | -2.163 | -2.096 | 1.313 | -3.126 |
12 | 0.782 | -0.452 | -1.189 | -0.135 |
13 | -1.298 | 1.147 | -1.681 | -0.938 |
14 | -0.86 | 1.177 | -4.4 | -1.138 |
15 | -1.242 | 0.404 | -1.489 | 0.687 |