Model info
| Transcription factor | ESR2 (GeneCards) | ||||||||
| Model | ESR2_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RGGTCAS | ||||||||
| Best auROC (human) | 0.879 | ||||||||
| Best auROC (mouse) | 0.851 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
| HGNC | HGNC:3468 | ||||||||
| EntrezGene | GeneID:2100 (SSTAR profile) | ||||||||
| UniProt ID | ESR2_HUMAN | ||||||||
| UniProt AC | Q92731 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ESR2 expression | ||||||||
| ReMap ChIP-seq dataset list | ESR2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 347.0 | 17.0 | 131.0 | 5.0 |
| 02 | 8.0 | 1.0 | 473.0 | 18.0 |
| 03 | 1.0 | 5.0 | 491.0 | 3.0 |
| 04 | 9.0 | 8.0 | 52.0 | 431.0 |
| 05 | 1.0 | 496.0 | 1.0 | 2.0 |
| 06 | 475.0 | 3.0 | 20.0 | 2.0 |
| 07 | 35.0 | 230.0 | 200.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.013 | -1.92 | 0.046 | -2.961 |
| 02 | -2.584 | -3.903 | 1.322 | -1.868 |
| 03 | -3.903 | -2.961 | 1.359 | -3.325 |
| 04 | -2.484 | -2.584 | -0.86 | 1.229 |
| 05 | -3.903 | 1.369 | -3.903 | -3.573 |
| 06 | 1.326 | -3.325 | -1.77 | -3.573 |
| 07 | -1.242 | 0.604 | 0.465 | -1.242 |