Transcription factor | Esr2 | ||||||||
Model | ESR2_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 8 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | RGGKCASn | ||||||||
Best auROC (human) | 0.859 | ||||||||
Best auROC (mouse) | 0.85 | ||||||||
Peak sets in benchmark (human) | 11 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 501 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
MGI | MGI:109392 | ||||||||
EntrezGene | GeneID:13983 (SSTAR profile) | ||||||||
UniProt ID | ESR2_MOUSE | ||||||||
UniProt AC | O08537 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Esr2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 317.0 | 8.0 | 171.0 | 4.0 |
02 | 9.0 | 0.0 | 484.0 | 7.0 |
03 | 0.0 | 6.0 | 490.0 | 4.0 |
04 | 25.0 | 7.0 | 104.0 | 364.0 |
05 | 5.0 | 492.0 | 3.0 | 0.0 |
06 | 494.0 | 2.0 | 0.0 | 4.0 |
07 | 23.0 | 128.0 | 299.0 | 50.0 |
08 | 125.0 | 125.0 | 217.0 | 33.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.923 | -2.584 | 0.31 | -3.126 |
02 | -2.484 | -4.4 | 1.345 | -2.694 |
03 | -4.4 | -2.819 | 1.357 | -3.126 |
04 | -1.561 | -2.694 | -0.181 | 1.061 |
05 | -2.961 | 1.361 | -3.325 | -4.4 |
06 | 1.365 | -3.573 | -4.4 | -3.126 |
07 | -1.64 | 0.023 | 0.865 | -0.898 |
08 | 0.0 | 0.0 | 0.546 | -1.298 |