Model info
| Transcription factor | Esr2 | ||||||||
| Model | ESR2_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RGGKCASn | ||||||||
| Best auROC (human) | 0.859 | ||||||||
| Best auROC (mouse) | 0.85 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
| MGI | MGI:109392 | ||||||||
| EntrezGene | GeneID:13983 (SSTAR profile) | ||||||||
| UniProt ID | ESR2_MOUSE | ||||||||
| UniProt AC | O08537 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Esr2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 317.0 | 8.0 | 171.0 | 4.0 |
| 02 | 9.0 | 0.0 | 484.0 | 7.0 |
| 03 | 0.0 | 6.0 | 490.0 | 4.0 |
| 04 | 25.0 | 7.0 | 104.0 | 364.0 |
| 05 | 5.0 | 492.0 | 3.0 | 0.0 |
| 06 | 494.0 | 2.0 | 0.0 | 4.0 |
| 07 | 23.0 | 128.0 | 299.0 | 50.0 |
| 08 | 125.0 | 125.0 | 217.0 | 33.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.923 | -2.584 | 0.31 | -3.126 |
| 02 | -2.484 | -4.4 | 1.345 | -2.694 |
| 03 | -4.4 | -2.819 | 1.357 | -3.126 |
| 04 | -1.561 | -2.694 | -0.181 | 1.061 |
| 05 | -2.961 | 1.361 | -3.325 | -4.4 |
| 06 | 1.365 | -3.573 | -4.4 | -3.126 |
| 07 | -1.64 | 0.023 | 0.865 | -0.898 |
| 08 | 0.0 | 0.0 | 0.546 | -1.298 |