ETV1_HUMAN.H11MO.0.A motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

ETV1
(GeneCards)

Model

ETV1_HUMAN.H11MO.0.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

A

Motif rank

0

Consensus

vvCCGGAAGbv

Best auROC (human)

0.941

Best auROC (mouse)

Peak sets in benchmark (human)

8

Peak sets in benchmark (mouse)

Aligned words

500

TF family

Ets-related factors {3.5.2}

TF subfamily

Elk-like factors {3.5.2.2}

HGNC

EntrezGene

GeneID:2115
(SSTAR profile)

UniProt ID

UniProt AC

P50549
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.4945950000000003
0.0005	4.57227
0.0001	6.627235

GTEx tissue expression atlas

ETV1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0761.1 (ETV1; Homo sapiens)

PCM

	A	C	G	T
01	75.0	122.0	242.0	61.0
02	165.0	67.0	203.0	65.0
03	21.0	407.0	72.0	0.0
04	108.0	383.0	1.0	8.0
05	2.0	0.0	498.0	0.0
06	0.0	0.0	500.0	0.0
07	499.0	0.0	1.0	0.0
08	465.0	2.0	0.0	33.0
09	38.0	18.0	434.0	10.0
10	44.0	152.0	71.0	233.0
11	97.0	74.0	263.0	66.0

PWM

	A	C	G	T
01	-0.503	-0.024	0.655	-0.705
02	0.275	-0.613	0.48	-0.643
03	-1.725	1.172	-0.543	-4.4
04	-0.144	1.111	-3.903	-2.584
05	-3.573	-4.4	1.373	-4.4
06	-4.4	-4.4	1.377	-4.4
07	1.375	-4.4	-3.903	-4.4
08	1.305	-3.573	-4.4	-1.298
09	-1.163	-1.868	1.236	-2.394
10	-1.022	0.193	-0.556	0.617
11	-0.25	-0.516	0.737	-0.628