Model info
| Transcription factor | ETV4 (GeneCards) | ||||||||
| Model | ETV4_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdSAGGAARbd | ||||||||
| Best auROC (human) | 0.819 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Elk-like factors {3.5.2.2} | ||||||||
| HGNC | HGNC:3493 | ||||||||
| EntrezGene | GeneID:2118 (SSTAR profile) | ||||||||
| UniProt ID | ETV4_HUMAN | ||||||||
| UniProt AC | P43268 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ETV4 expression | ||||||||
| ReMap ChIP-seq dataset list | ETV4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 168.0 | 117.0 | 165.0 | 50.0 |
| 02 | 192.0 | 67.0 | 160.0 | 81.0 |
| 03 | 68.0 | 305.0 | 117.0 | 10.0 |
| 04 | 478.0 | 5.0 | 10.0 | 7.0 |
| 05 | 3.0 | 1.0 | 488.0 | 8.0 |
| 06 | 8.0 | 13.0 | 479.0 | 0.0 |
| 07 | 462.0 | 8.0 | 25.0 | 5.0 |
| 08 | 435.0 | 7.0 | 23.0 | 35.0 |
| 09 | 154.0 | 11.0 | 294.0 | 41.0 |
| 10 | 69.0 | 89.0 | 173.0 | 169.0 |
| 11 | 144.0 | 66.0 | 207.0 | 83.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.293 | -0.065 | 0.275 | -0.898 |
| 02 | 0.425 | -0.613 | 0.244 | -0.427 |
| 03 | -0.599 | 0.885 | -0.065 | -2.394 |
| 04 | 1.332 | -2.961 | -2.394 | -2.694 |
| 05 | -3.325 | -3.903 | 1.353 | -2.584 |
| 06 | -2.584 | -2.163 | 1.334 | -4.4 |
| 07 | 1.298 | -2.584 | -1.561 | -2.961 |
| 08 | 1.238 | -2.694 | -1.64 | -1.242 |
| 09 | 0.206 | -2.311 | 0.848 | -1.09 |
| 10 | -0.584 | -0.335 | 0.322 | 0.298 |
| 11 | 0.14 | -0.628 | 0.5 | -0.403 |