Model info
| Transcription factor | Etv6 | ||||||||
| Model | ETV6_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dSAGGAARb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.853 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | ETV6-like factors {3.5.2.6} | ||||||||
| MGI | MGI:109336 | ||||||||
| EntrezGene | GeneID:14011 (SSTAR profile) | ||||||||
| UniProt ID | ETV6_MOUSE | ||||||||
| UniProt AC | P97360 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Etv6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 187.0 | 80.0 | 152.0 | 81.0 |
| 02 | 63.0 | 287.0 | 135.0 | 15.0 |
| 03 | 458.0 | 5.0 | 2.0 | 35.0 |
| 04 | 3.0 | 0.0 | 496.0 | 1.0 |
| 05 | 2.0 | 5.0 | 489.0 | 4.0 |
| 06 | 443.0 | 33.0 | 24.0 | 0.0 |
| 07 | 459.0 | 3.0 | 11.0 | 27.0 |
| 08 | 195.0 | 9.0 | 252.0 | 44.0 |
| 09 | 61.0 | 65.0 | 165.0 | 209.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.399 | -0.439 | 0.193 | -0.427 |
| 02 | -0.673 | 0.824 | 0.076 | -2.034 |
| 03 | 1.29 | -2.961 | -3.573 | -1.242 |
| 04 | -3.325 | -4.4 | 1.369 | -3.903 |
| 05 | -3.573 | -2.961 | 1.355 | -3.126 |
| 06 | 1.256 | -1.298 | -1.6 | -4.4 |
| 07 | 1.292 | -3.325 | -2.311 | -1.489 |
| 08 | 0.44 | -2.484 | 0.695 | -1.022 |
| 09 | -0.705 | -0.643 | 0.275 | 0.509 |