Check the newest release v12
Model info
Transcription factorFOXA1
(GeneCards)
ModelFOXA1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnnnTGTTTACWYWdbn
Best auROC (human)0.992
Best auROC (mouse)0.98
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words502
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5021
EntrezGeneGeneID:3169
(SSTAR profile)
UniProt IDFOXA1_HUMAN
UniProt ACP55317
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.097010000000001
0.0005 11.63401
0.0001 16.53236
GTEx tissue expression atlas FOXA1 expression
ReMap ChIP-seq dataset list FOXA1 datasets
Motifs in JASPAR
MA0148.1 (FOXA1; Homo sapiens)
MA0148.2 (FOXA1; Homo sapiens)
MA0148.3 (FOXA1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.030.017.07.043.031.07.077.016.037.030.034.013.048.044.042.0
0229.022.029.016.045.027.09.065.021.030.013.034.013.043.055.049.0
032.00.00.0106.00.00.00.0122.03.00.00.0103.03.01.00.0160.0
040.00.08.00.01.00.00.00.00.00.00.00.0128.00.0363.00.0
051.00.00.0128.00.00.00.00.01.01.00.0369.00.00.00.00.0
060.00.00.02.00.00.00.01.00.00.00.00.00.00.033.0464.0
070.00.00.00.00.00.00.00.00.00.00.033.00.00.055.0412.0
080.00.00.00.00.00.00.00.053.00.00.02.0332.00.0110.03.0
091.0323.03.058.00.00.00.00.02.067.02.039.00.05.00.00.0
101.01.00.01.0146.050.01.0198.00.00.00.05.017.011.01.068.0
117.055.021.081.04.022.03.033.00.01.01.00.06.078.022.0166.0
1210.00.01.06.0100.02.01.053.034.02.00.011.093.07.08.0172.0
1364.021.0115.037.05.03.00.03.04.00.05.01.025.027.0136.054.0
1413.017.043.025.015.017.03.016.027.068.0110.051.06.033.043.013.0
1517.08.023.013.041.017.08.069.052.077.035.035.019.013.048.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.26-0.04-0.599-1.4540.316-0.008-1.4540.894-0.6580.167-0.040.083-0.860.4250.3390.293
02-0.074-0.346-0.074-0.6580.361-0.144-1.2150.726-0.392-0.04-0.860.083-0.860.3160.560.445
03-2.584-4.4-4.41.213-4.4-4.4-4.41.353-2.234-4.4-4.41.184-2.234-3.126-4.41.623
04-4.4-4.4-1.328-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.41.401-4.42.441-4.4
05-3.126-4.4-4.41.401-4.4-4.4-4.4-4.4-3.126-3.126-4.42.457-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.40.0542.686
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.40.054-4.4-4.40.562.568
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.40.523-4.4-4.4-2.5842.352-4.41.25-2.234
09-3.1262.324-2.2340.613-4.4-4.4-4.4-4.4-2.5840.756-2.5840.219-4.4-1.77-4.4-4.4
10-3.126-3.126-4.4-3.1261.5320.465-3.1261.836-4.4-4.4-4.4-1.77-0.599-1.022-3.1260.771
11-1.4540.56-0.3920.945-1.975-0.346-2.2340.054-4.4-3.126-3.126-4.4-1.60.907-0.3461.66
12-1.114-4.4-3.126-1.61.155-2.584-3.1260.5230.083-2.584-4.4-1.0221.082-1.454-1.3281.695
130.711-0.3921.2940.167-1.77-2.234-4.4-2.234-1.975-4.4-1.77-3.126-0.22-0.1441.4610.542
14-0.86-0.5990.316-0.22-0.721-0.599-2.234-0.658-0.1440.7711.250.485-1.60.0540.316-0.86
15-0.599-1.328-0.302-0.860.269-0.599-1.3280.7850.5040.8940.1120.112-0.49-0.860.425-0.22