We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXA1
(GeneCards)
ModelFOXA1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnnnTGTTTACWYWdbn
Best auROC (human)0.992
Best auROC (mouse)0.98
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words502
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5021
EntrezGeneGeneID:3169
(SSTAR profile)
UniProt IDFOXA1_HUMAN
UniProt ACP55317
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.097010000000001
0.0005 11.63401
0.0001 16.53236
GTEx tissue expression atlas FOXA1 expression
ReMap ChIP-seq dataset list FOXA1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.030.017.07.043.031.07.077.016.037.030.034.013.048.044.042.0
0229.022.029.016.045.027.09.065.021.030.013.034.013.043.055.049.0
032.00.00.0106.00.00.00.0122.03.00.00.0103.03.01.00.0160.0
040.00.08.00.01.00.00.00.00.00.00.00.0128.00.0363.00.0
051.00.00.0128.00.00.00.00.01.01.00.0369.00.00.00.00.0
060.00.00.02.00.00.00.01.00.00.00.00.00.00.033.0464.0
070.00.00.00.00.00.00.00.00.00.00.033.00.00.055.0412.0
080.00.00.00.00.00.00.00.053.00.00.02.0332.00.0110.03.0
091.0323.03.058.00.00.00.00.02.067.02.039.00.05.00.00.0
101.01.00.01.0146.050.01.0198.00.00.00.05.017.011.01.068.0
117.055.021.081.04.022.03.033.00.01.01.00.06.078.022.0166.0
1210.00.01.06.0100.02.01.053.034.02.00.011.093.07.08.0172.0
1364.021.0115.037.05.03.00.03.04.00.05.01.025.027.0136.054.0
1413.017.043.025.015.017.03.016.027.068.0110.051.06.033.043.013.0
1517.08.023.013.041.017.08.069.052.077.035.035.019.013.048.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.26-0.04-0.599-1.4540.316-0.008-1.4540.894-0.6580.167-0.040.083-0.860.4250.3390.293
02-0.074-0.346-0.074-0.6580.361-0.144-1.2150.726-0.392-0.04-0.860.083-0.860.3160.560.445
03-2.584-4.4-4.41.213-4.4-4.4-4.41.353-2.234-4.4-4.41.184-2.234-3.126-4.41.623
04-4.4-4.4-1.328-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.41.401-4.42.441-4.4
05-3.126-4.4-4.41.401-4.4-4.4-4.4-4.4-3.126-3.126-4.42.457-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.40.0542.686
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.40.054-4.4-4.40.562.568
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.40.523-4.4-4.4-2.5842.352-4.41.25-2.234
09-3.1262.324-2.2340.613-4.4-4.4-4.4-4.4-2.5840.756-2.5840.219-4.4-1.77-4.4-4.4
10-3.126-3.126-4.4-3.1261.5320.465-3.1261.836-4.4-4.4-4.4-1.77-0.599-1.022-3.1260.771
11-1.4540.56-0.3920.945-1.975-0.346-2.2340.054-4.4-3.126-3.126-4.4-1.60.907-0.3461.66
12-1.114-4.4-3.126-1.61.155-2.584-3.1260.5230.083-2.584-4.4-1.0221.082-1.454-1.3281.695
130.711-0.3921.2940.167-1.77-2.234-4.4-2.234-1.975-4.4-1.77-3.126-0.22-0.1441.4610.542
14-0.86-0.5990.316-0.22-0.721-0.599-2.234-0.658-0.1440.7711.250.485-1.60.0540.316-0.86
15-0.599-1.328-0.302-0.860.269-0.599-1.3280.7850.5040.8940.1120.112-0.49-0.860.425-0.22