Model info
| Transcription factor | FOXA1 (GeneCards) | ||||||||
| Model | FOXA1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGTTTACWYWdb | ||||||||
| Best auROC (human) | 0.988 | ||||||||
| Best auROC (mouse) | 0.974 | ||||||||
| Peak sets in benchmark (human) | 199 | ||||||||
| Peak sets in benchmark (mouse) | 28 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXA {3.3.1.1} | ||||||||
| HGNC | HGNC:5021 | ||||||||
| EntrezGene | GeneID:3169 (SSTAR profile) | ||||||||
| UniProt ID | FOXA1_HUMAN | ||||||||
| UniProt AC | P55317 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | FOXA1 expression | ||||||||
| ReMap ChIP-seq dataset list | FOXA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.0 | 0.0 | 0.0 | 492.0 |
| 02 | 123.0 | 2.0 | 375.0 | 0.0 |
| 03 | 1.0 | 0.0 | 0.0 | 499.0 |
| 04 | 2.0 | 0.0 | 28.0 | 470.0 |
| 05 | 0.0 | 0.0 | 72.0 | 428.0 |
| 06 | 391.0 | 0.0 | 103.0 | 6.0 |
| 07 | 4.0 | 399.0 | 4.0 | 93.0 |
| 08 | 159.0 | 69.0 | 2.0 | 270.0 |
| 09 | 16.0 | 157.0 | 54.0 | 273.0 |
| 10 | 232.0 | 10.0 | 8.0 | 250.0 |
| 11 | 109.0 | 49.0 | 247.0 | 95.0 |
| 12 | 54.0 | 130.0 | 197.0 | 119.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.584 | -4.4 | -4.4 | 1.361 |
| 02 | -0.016 | -3.573 | 1.09 | -4.4 |
| 03 | -3.903 | -4.4 | -4.4 | 1.375 |
| 04 | -3.573 | -4.4 | -1.454 | 1.315 |
| 05 | -4.4 | -4.4 | -0.543 | 1.222 |
| 06 | 1.132 | -4.4 | -0.191 | -2.819 |
| 07 | -3.126 | 1.152 | -3.126 | -0.291 |
| 08 | 0.238 | -0.584 | -3.573 | 0.763 |
| 09 | -1.975 | 0.225 | -0.823 | 0.774 |
| 10 | 0.613 | -2.394 | -2.584 | 0.687 |
| 11 | -0.135 | -0.918 | 0.675 | -0.271 |
| 12 | -0.823 | 0.039 | 0.45 | -0.049 |