We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXA1
(GeneCards)
ModelFOXA1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusTGTTTACWYWdb
Best auROC (human)0.988
Best auROC (mouse)0.974
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words500
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5021
EntrezGeneGeneID:3169
(SSTAR profile)
UniProt IDFOXA1_HUMAN
UniProt ACP55317
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.910175
0.0005 6.012555
0.0001 8.251294999999999
GTEx tissue expression atlas FOXA1 expression
ReMap ChIP-seq dataset list FOXA1 datasets
Motifs in JASPAR
MA0148.1 (FOXA1; Homo sapiens)
MA0148.2 (FOXA1; Homo sapiens)
MA0148.3 (FOXA1; Homo sapiens)
PCM
ACGT
018.00.00.0492.0
02123.02.0375.00.0
031.00.00.0499.0
042.00.028.0470.0
050.00.072.0428.0
06391.00.0103.06.0
074.0399.04.093.0
08159.069.02.0270.0
0916.0157.054.0273.0
10232.010.08.0250.0
11109.049.0247.095.0
1254.0130.0197.0119.0
PWM
ACGT
01-2.584-4.4-4.41.361
02-0.016-3.5731.09-4.4
03-3.903-4.4-4.41.375
04-3.573-4.4-1.4541.315
05-4.4-4.4-0.5431.222
061.132-4.4-0.191-2.819
07-3.1261.152-3.126-0.291
080.238-0.584-3.5730.763
09-1.9750.225-0.8230.774
100.613-2.394-2.5840.687
11-0.135-0.9180.675-0.271
12-0.8230.0390.45-0.049