We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFoxa1
ModelFOXA1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbnnTGTTTACWYWdn
Best auROC (human)0.987
Best auROC (mouse)0.984
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words510
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
MGIMGI:1347472
EntrezGeneGeneID:15375
(SSTAR profile)
UniProt IDFOXA1_MOUSE
UniProt ACP35582
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.813860000000002
0.0005 11.12221
0.0001 16.07356
GTEx tissue expression atlas Foxa1 expression
Motifs in JASPAR
MA0148.1 (FOXA1; Homo sapiens)
MA0148.2 (FOXA1; Homo sapiens)
MA0148.3 (FOXA1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.033.025.012.026.051.05.043.016.050.031.022.014.079.043.044.0
0214.021.026.01.051.047.010.0105.011.040.031.022.08.056.042.015.0
0332.015.026.011.046.027.010.081.025.028.027.029.012.036.047.048.0
043.00.00.0112.00.01.00.0105.01.00.00.0109.01.00.00.0168.0
053.00.02.00.01.00.00.00.00.00.00.00.0149.01.0343.01.0
061.00.00.0152.00.00.00.01.03.01.01.0340.00.00.00.01.0
070.00.00.04.00.00.00.01.00.00.00.01.01.00.020.0473.0
080.00.00.01.00.00.00.00.00.00.03.017.01.01.083.0394.0
090.01.00.00.01.00.00.00.086.00.00.00.0380.05.025.02.0
100.0409.03.055.00.06.00.00.00.021.00.04.00.02.00.00.0
110.00.00.00.0192.079.02.0165.01.01.00.01.012.03.00.044.0
1216.077.020.092.016.027.01.039.00.00.00.02.09.049.016.0136.0
1327.00.01.013.0105.03.02.043.025.01.07.04.091.06.014.0158.0
1467.025.0119.037.03.02.02.03.05.04.09.06.032.044.082.060.0
1528.028.034.017.018.017.07.033.025.068.052.067.015.031.037.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.60.054-0.22-0.938-0.1810.485-1.770.316-0.6580.465-0.008-0.346-0.7880.920.3160.339
02-0.788-0.392-0.181-3.1260.4850.404-1.1141.203-1.0220.244-0.008-0.346-1.3280.5780.293-0.721
030.023-0.721-0.181-1.0220.383-0.144-1.1140.945-0.22-0.108-0.144-0.074-0.9380.140.4040.425
04-2.234-4.4-4.41.268-4.4-3.126-4.41.203-3.126-4.4-4.41.241-3.126-4.4-4.41.672
05-2.234-4.4-2.584-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.41.552-3.1262.384-3.126
06-3.126-4.4-4.41.572-4.4-4.4-4.4-3.126-2.234-3.126-3.1262.376-4.4-4.4-4.4-3.126
07-4.4-4.4-4.4-1.975-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-3.126-4.4-0.4392.706
08-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-2.234-0.599-3.126-3.1260.9692.523
09-4.4-3.126-4.4-4.4-3.126-4.4-4.4-4.41.004-4.4-4.4-4.42.487-1.77-0.22-2.584
10-4.42.56-2.2340.56-4.4-1.6-4.4-4.4-4.4-0.392-4.4-1.975-4.4-2.584-4.4-4.4
11-4.4-4.4-4.4-4.41.8050.92-2.5841.654-3.126-3.126-4.4-3.126-0.938-2.234-4.40.339
12-0.6580.894-0.4391.072-0.658-0.144-3.1260.219-4.4-4.4-4.4-2.584-1.2150.445-0.6581.461
13-0.144-4.4-3.126-0.861.203-2.234-2.5840.316-0.22-3.126-1.454-1.9751.061-1.6-0.7881.611
140.756-0.221.3280.167-2.234-2.584-2.584-2.234-1.77-1.975-1.215-1.60.0230.3390.9570.646
15-0.108-0.1080.083-0.599-0.543-0.599-1.4540.054-0.220.7710.5040.756-0.721-0.0080.167-0.302