Model info
| Transcription factor | Foxa1 | ||||||||
| Model | FOXA1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGTTTACWYW | ||||||||
| Best auROC (human) | 0.98 | ||||||||
| Best auROC (mouse) | 0.978 | ||||||||
| Peak sets in benchmark (human) | 199 | ||||||||
| Peak sets in benchmark (mouse) | 28 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXA {3.3.1.1} | ||||||||
| MGI | MGI:1347472 | ||||||||
| EntrezGene | GeneID:15375 (SSTAR profile) | ||||||||
| UniProt ID | FOXA1_MOUSE | ||||||||
| UniProt AC | P35582 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Foxa1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.0 | 1.0 | 0.0 | 488.0 |
| 02 | 129.0 | 0.0 | 371.0 | 0.0 |
| 03 | 0.0 | 0.0 | 0.0 | 500.0 |
| 04 | 2.0 | 0.0 | 29.0 | 469.0 |
| 05 | 0.0 | 0.0 | 149.0 | 351.0 |
| 06 | 464.0 | 1.0 | 33.0 | 2.0 |
| 07 | 6.0 | 457.0 | 0.0 | 37.0 |
| 08 | 218.0 | 66.0 | 0.0 | 216.0 |
| 09 | 27.0 | 183.0 | 46.0 | 244.0 |
| 10 | 241.0 | 6.0 | 22.0 | 231.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.311 | -3.903 | -4.4 | 1.353 |
| 02 | 0.031 | -4.4 | 1.08 | -4.4 |
| 03 | -4.4 | -4.4 | -4.4 | 1.377 |
| 04 | -3.573 | -4.4 | -1.421 | 1.313 |
| 05 | -4.4 | -4.4 | 0.174 | 1.025 |
| 06 | 1.303 | -3.903 | -1.298 | -3.573 |
| 07 | -2.819 | 1.287 | -4.4 | -1.189 |
| 08 | 0.551 | -0.628 | -4.4 | 0.542 |
| 09 | -1.489 | 0.377 | -0.979 | 0.663 |
| 10 | 0.651 | -2.819 | -1.681 | 0.608 |