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Model info
Transcription factorFOXA2
(GeneCards)
ModelFOXA2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbnbTGTTTACWbWdb
Best auROC (human)0.984
Best auROC (mouse)0.992
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words520
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5022
EntrezGeneGeneID:3170
(SSTAR profile)
UniProt IDFOXA2_HUMAN
UniProt ACQ9Y261
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.059360000000002
0.0005 11.33331
0.0001 15.930109999999999
GTEx tissue expression atlas FOXA2 expression
ReMap ChIP-seq dataset list FOXA2 datasets
Motifs in JASPAR
MA0047.1 (Foxa2; Rattus norvegicus)
MA0047.2 (Foxa2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0118.028.031.017.019.058.04.040.019.068.028.031.05.055.046.033.0
029.012.029.011.053.059.014.083.08.049.038.014.010.049.049.013.0
0316.015.043.06.022.050.08.089.014.042.040.034.03.044.041.033.0
041.02.01.051.07.01.01.0142.03.00.01.0128.02.01.01.0158.0
054.00.09.00.00.00.04.00.00.00.04.00.075.01.0402.01.0
060.00.00.079.00.00.00.01.00.03.01.0415.00.00.00.01.0
070.00.00.00.00.00.00.03.00.00.00.01.00.01.049.0446.0
080.00.00.00.00.00.00.01.00.01.04.044.01.00.098.0351.0
090.00.01.00.01.00.00.00.0101.00.00.01.0279.02.0115.00.0
103.0348.00.030.00.02.00.00.04.087.00.025.00.01.00.00.0
112.01.01.03.0205.042.08.0183.00.00.00.00.03.06.00.046.0
1231.086.045.048.02.022.01.024.01.02.04.02.010.073.029.0120.0
1332.03.04.05.0112.04.03.064.053.03.04.019.075.013.010.096.0
1459.019.0162.032.04.06.02.011.02.04.07.08.042.037.072.033.0
1512.022.060.013.015.021.06.024.032.083.077.051.07.042.029.06.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.543-0.108-0.008-0.599-0.490.613-1.9750.244-0.490.771-0.108-0.008-1.770.560.3830.054
02-1.215-0.938-0.074-1.0220.5230.63-0.7880.969-1.3280.4450.193-0.788-1.1140.4450.445-0.86
03-0.658-0.7210.316-1.6-0.3460.465-1.3281.039-0.7880.2930.2440.083-2.2340.3390.2690.054
04-3.126-2.584-3.1260.485-1.454-3.126-3.1261.504-2.234-4.4-3.1261.401-2.584-3.126-3.1261.611
05-1.975-4.4-1.215-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.975-4.40.868-3.1262.543-3.126
06-4.4-4.4-4.40.92-4.4-4.4-4.4-3.126-4.4-2.234-3.1262.575-4.4-4.4-4.4-3.126
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.234-4.4-4.4-4.4-3.126-4.4-3.1260.4452.647
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-3.126-1.9750.339-3.126-4.41.1352.408
09-4.4-4.4-3.126-4.4-3.126-4.4-4.4-4.41.165-4.4-4.4-3.1262.178-2.5841.294-4.4
10-2.2342.399-4.4-0.04-4.4-2.584-4.4-4.4-1.9751.016-4.4-0.22-4.4-3.126-4.4-4.4
11-2.584-3.126-3.126-2.2341.8710.293-1.3281.757-4.4-4.4-4.4-4.4-2.234-1.6-4.40.383
12-0.0081.0040.3610.425-2.584-0.346-3.126-0.26-3.126-2.584-1.975-2.584-1.1140.841-0.0741.336
130.023-2.234-1.975-1.771.268-1.975-2.2340.7110.523-2.234-1.975-0.490.868-0.86-1.1141.114
140.63-0.491.6360.023-1.975-1.6-2.584-1.022-2.584-1.975-1.454-1.3280.2930.1670.8280.054
15-0.938-0.3460.646-0.86-0.721-0.392-1.6-0.260.0230.9690.8940.485-1.4540.293-0.074-1.6