We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXA2
(GeneCards)
ModelFOXA2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbnbTGTTTACWbWdb
Best auROC (human)0.984
Best auROC (mouse)0.992
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words520
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5022
EntrezGeneGeneID:3170
(SSTAR profile)
UniProt IDFOXA2_HUMAN
UniProt ACQ9Y261
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.059360000000002
0.0005 11.33331
0.0001 15.930109999999999
GTEx tissue expression atlas FOXA2 expression
ReMap ChIP-seq dataset list FOXA2 datasets
Motifs in JASPAR
MA0047.1 (Foxa2; Rattus norvegicus)
MA0047.2 (Foxa2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0118.028.031.017.019.058.04.040.019.068.028.031.05.055.046.033.0
029.012.029.011.053.059.014.083.08.049.038.014.010.049.049.013.0
0316.015.043.06.022.050.08.089.014.042.040.034.03.044.041.033.0
041.02.01.051.07.01.01.0142.03.00.01.0128.02.01.01.0158.0
054.00.09.00.00.00.04.00.00.00.04.00.075.01.0402.01.0
060.00.00.079.00.00.00.01.00.03.01.0415.00.00.00.01.0
070.00.00.00.00.00.00.03.00.00.00.01.00.01.049.0446.0
080.00.00.00.00.00.00.01.00.01.04.044.01.00.098.0351.0
090.00.01.00.01.00.00.00.0101.00.00.01.0279.02.0115.00.0
103.0348.00.030.00.02.00.00.04.087.00.025.00.01.00.00.0
112.01.01.03.0205.042.08.0183.00.00.00.00.03.06.00.046.0
1231.086.045.048.02.022.01.024.01.02.04.02.010.073.029.0120.0
1332.03.04.05.0112.04.03.064.053.03.04.019.075.013.010.096.0
1459.019.0162.032.04.06.02.011.02.04.07.08.042.037.072.033.0
1512.022.060.013.015.021.06.024.032.083.077.051.07.042.029.06.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.543-0.108-0.008-0.599-0.490.613-1.9750.244-0.490.771-0.108-0.008-1.770.560.3830.054
02-1.215-0.938-0.074-1.0220.5230.63-0.7880.969-1.3280.4450.193-0.788-1.1140.4450.445-0.86
03-0.658-0.7210.316-1.6-0.3460.465-1.3281.039-0.7880.2930.2440.083-2.2340.3390.2690.054
04-3.126-2.584-3.1260.485-1.454-3.126-3.1261.504-2.234-4.4-3.1261.401-2.584-3.126-3.1261.611
05-1.975-4.4-1.215-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.975-4.40.868-3.1262.543-3.126
06-4.4-4.4-4.40.92-4.4-4.4-4.4-3.126-4.4-2.234-3.1262.575-4.4-4.4-4.4-3.126
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.234-4.4-4.4-4.4-3.126-4.4-3.1260.4452.647
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-3.126-1.9750.339-3.126-4.41.1352.408
09-4.4-4.4-3.126-4.4-3.126-4.4-4.4-4.41.165-4.4-4.4-3.1262.178-2.5841.294-4.4
10-2.2342.399-4.4-0.04-4.4-2.584-4.4-4.4-1.9751.016-4.4-0.22-4.4-3.126-4.4-4.4
11-2.584-3.126-3.126-2.2341.8710.293-1.3281.757-4.4-4.4-4.4-4.4-2.234-1.6-4.40.383
12-0.0081.0040.3610.425-2.584-0.346-3.126-0.26-3.126-2.584-1.975-2.584-1.1140.841-0.0741.336
130.023-2.234-1.975-1.771.268-1.975-2.2340.7110.523-2.234-1.975-0.490.868-0.86-1.1141.114
140.63-0.491.6360.023-1.975-1.6-2.584-1.022-2.584-1.975-1.454-1.3280.2930.1670.8280.054
15-0.938-0.3460.646-0.86-0.721-0.392-1.6-0.260.0230.9690.8940.485-1.4540.293-0.074-1.6