Model info
| Transcription factor | FOXA2 (GeneCards) | ||||||||
| Model | FOXA2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGTTTACWbWdb | ||||||||
| Best auROC (human) | 0.982 | ||||||||
| Best auROC (mouse) | 0.988 | ||||||||
| Peak sets in benchmark (human) | 22 | ||||||||
| Peak sets in benchmark (mouse) | 34 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXA {3.3.1.1} | ||||||||
| HGNC | HGNC:5022 | ||||||||
| EntrezGene | GeneID:3170 (SSTAR profile) | ||||||||
| UniProt ID | FOXA2_HUMAN | ||||||||
| UniProt AC | Q9Y261 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | FOXA2 expression | ||||||||
| ReMap ChIP-seq dataset list | FOXA2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.0 | 0.0 | 1.0 | 491.0 |
| 02 | 98.0 | 1.0 | 400.0 | 1.0 |
| 03 | 0.0 | 2.0 | 0.0 | 498.0 |
| 04 | 1.0 | 0.0 | 22.0 | 477.0 |
| 05 | 0.0 | 0.0 | 72.0 | 428.0 |
| 06 | 379.0 | 0.0 | 118.0 | 3.0 |
| 07 | 4.0 | 444.0 | 1.0 | 51.0 |
| 08 | 201.0 | 61.0 | 0.0 | 238.0 |
| 09 | 22.0 | 205.0 | 60.0 | 213.0 |
| 10 | 282.0 | 4.0 | 20.0 | 194.0 |
| 11 | 95.0 | 48.0 | 275.0 | 82.0 |
| 12 | 64.0 | 179.0 | 141.0 | 116.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.584 | -4.4 | -3.903 | 1.359 |
| 02 | -0.24 | -3.903 | 1.155 | -3.903 |
| 03 | -4.4 | -3.573 | -4.4 | 1.373 |
| 04 | -3.903 | -4.4 | -1.681 | 1.33 |
| 05 | -4.4 | -4.4 | -0.543 | 1.222 |
| 06 | 1.101 | -4.4 | -0.057 | -3.325 |
| 07 | -3.126 | 1.259 | -3.903 | -0.879 |
| 08 | 0.47 | -0.705 | -4.4 | 0.638 |
| 09 | -1.681 | 0.49 | -0.721 | 0.528 |
| 10 | 0.807 | -3.126 | -1.77 | 0.435 |
| 11 | -0.271 | -0.938 | 0.782 | -0.415 |
| 12 | -0.658 | 0.355 | 0.119 | -0.074 |