We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXA2
(GeneCards)
ModelFOXA2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusTGTTTACWbWdb
Best auROC (human)0.982
Best auROC (mouse)0.988
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words500
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
HGNCHGNC:5022
EntrezGeneGeneID:3170
(SSTAR profile)
UniProt IDFOXA2_HUMAN
UniProt ACQ9Y261
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.7095199999999995
0.0005 5.810255
0.0001 8.14199
GTEx tissue expression atlas FOXA2 expression
ReMap ChIP-seq dataset list FOXA2 datasets
Motifs in JASPAR
MA0047.1 (Foxa2; Rattus norvegicus)
MA0047.2 (Foxa2; Mus musculus)
PCM
ACGT
018.00.01.0491.0
0298.01.0400.01.0
030.02.00.0498.0
041.00.022.0477.0
050.00.072.0428.0
06379.00.0118.03.0
074.0444.01.051.0
08201.061.00.0238.0
0922.0205.060.0213.0
10282.04.020.0194.0
1195.048.0275.082.0
1264.0179.0141.0116.0
PWM
ACGT
01-2.584-4.4-3.9031.359
02-0.24-3.9031.155-3.903
03-4.4-3.573-4.41.373
04-3.903-4.4-1.6811.33
05-4.4-4.4-0.5431.222
061.101-4.4-0.057-3.325
07-3.1261.259-3.903-0.879
080.47-0.705-4.40.638
09-1.6810.49-0.7210.528
100.807-3.126-1.770.435
11-0.271-0.9380.782-0.415
12-0.6580.3550.119-0.074