We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFoxa2
ModelFOXA2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbnhTGTTTACWYWdn
Best auROC (human)0.985
Best auROC (mouse)0.994
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words501
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
MGIMGI:1347476
EntrezGeneGeneID:15376
(SSTAR profile)
UniProt IDFOXA2_MOUSE
UniProt ACP35583
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.286760000000001
0.0005 10.81796
0.0001 16.05011
GTEx tissue expression atlas Foxa2 expression
Motifs in JASPAR
MA0047.1 (Foxa2; Rattus norvegicus)
MA0047.2 (Foxa2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0115.027.023.016.019.059.04.038.015.063.018.030.013.095.031.032.0
025.020.037.00.079.070.07.088.07.036.021.012.03.065.036.012.0
0340.022.021.011.051.031.08.0101.023.023.017.038.06.022.029.055.0
040.01.01.0118.00.00.00.098.01.00.00.074.00.00.01.0204.0
051.00.00.00.01.00.00.00.00.00.02.00.0145.00.0349.00.0
060.00.00.0147.00.00.00.00.00.00.01.0350.00.00.00.00.0
070.00.00.00.00.00.00.00.00.00.00.01.00.00.022.0475.0
080.00.00.00.00.00.00.00.00.00.02.020.00.00.0135.0341.0
090.00.00.00.00.00.00.00.0136.00.01.00.0315.00.045.01.0
105.0403.03.040.00.00.00.00.02.028.00.016.00.01.00.00.0
114.01.00.02.0186.040.01.0205.01.01.00.01.08.03.00.045.0
1222.082.029.066.05.014.00.026.00.00.00.01.04.069.013.0167.0
1319.00.03.09.098.01.00.066.029.00.00.013.095.04.016.0145.0
1471.020.0121.029.02.00.01.02.03.01.09.06.022.025.0137.049.0
1523.022.031.022.07.012.02.025.049.057.098.064.012.038.022.014.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.717-0.14-0.298-0.654-0.4860.634-1.9710.197-0.7170.699-0.539-0.036-0.8561.108-0.0040.027
02-1.766-0.4350.171-4.3970.9240.804-1.4511.031-1.4510.144-0.388-0.934-2.230.730.144-0.934
030.248-0.342-0.388-1.0180.489-0.004-1.3241.169-0.298-0.298-0.5950.197-1.596-0.342-0.070.564
04-4.397-3.122-3.1221.324-4.397-4.397-4.3971.139-3.122-4.397-4.3970.859-4.397-4.397-3.1221.87
05-3.122-4.397-4.397-4.397-3.122-4.397-4.397-4.397-4.397-4.397-2.58-4.3971.529-4.3972.406-4.397
06-4.397-4.397-4.3971.543-4.397-4.397-4.397-4.397-4.397-4.397-3.1222.409-4.397-4.397-4.397-4.397
07-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-3.122-4.397-4.397-0.3422.714
08-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-2.58-0.435-4.397-4.3971.4582.383
09-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.3971.465-4.397-3.122-4.3972.303-4.3970.365-3.122
10-1.7662.549-2.230.248-4.397-4.397-4.397-4.397-2.58-0.104-4.397-0.654-4.397-3.122-4.397-4.397
11-1.971-3.122-4.397-2.581.7770.248-3.1221.874-3.122-3.122-4.397-3.122-1.324-2.23-4.3970.365
12-0.3420.961-0.070.745-1.766-0.784-4.397-0.177-4.397-4.397-4.397-3.122-1.9710.789-0.8561.67
13-0.486-4.397-2.23-1.2111.139-3.122-4.3970.745-0.07-4.397-4.397-0.8561.108-1.971-0.6541.529
140.818-0.4351.349-0.07-2.58-4.397-3.122-2.58-2.23-3.122-1.211-1.596-0.342-0.2161.4720.449
15-0.298-0.342-0.004-0.342-1.451-0.934-2.58-0.2160.4490.5991.1390.715-0.9340.197-0.342-0.784