Model info
| Transcription factor | Foxa2 | ||||||||
| Model | FOXA2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bnhTGTTTACWbW | ||||||||
| Best auROC (human) | 0.977 | ||||||||
| Best auROC (mouse) | 0.992 | ||||||||
| Peak sets in benchmark (human) | 22 | ||||||||
| Peak sets in benchmark (mouse) | 34 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXA {3.3.1.1} | ||||||||
| MGI | MGI:1347476 | ||||||||
| EntrezGene | GeneID:15376 (SSTAR profile) | ||||||||
| UniProt ID | FOXA2_MOUSE | ||||||||
| UniProt AC | P35583 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Foxa2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 55.0 | 200.0 | 90.0 | 155.0 |
| 02 | 84.0 | 179.0 | 127.0 | 110.0 |
| 03 | 99.0 | 133.0 | 57.0 | 211.0 |
| 04 | 23.0 | 4.0 | 1.0 | 472.0 |
| 05 | 152.0 | 7.0 | 341.0 | 0.0 |
| 06 | 4.0 | 2.0 | 2.0 | 492.0 |
| 07 | 3.0 | 1.0 | 33.0 | 463.0 |
| 08 | 0.0 | 0.0 | 148.0 | 352.0 |
| 09 | 452.0 | 1.0 | 32.0 | 15.0 |
| 10 | 2.0 | 454.0 | 1.0 | 43.0 |
| 11 | 218.0 | 53.0 | 1.0 | 228.0 |
| 12 | 48.0 | 143.0 | 49.0 | 260.0 |
| 13 | 236.0 | 4.0 | 19.0 | 241.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.805 | 0.465 | -0.324 | 0.213 |
| 02 | -0.392 | 0.355 | 0.016 | -0.126 |
| 03 | -0.23 | 0.061 | -0.771 | 0.519 |
| 04 | -1.64 | -3.126 | -3.903 | 1.32 |
| 05 | 0.193 | -2.694 | 0.996 | -4.4 |
| 06 | -3.126 | -3.573 | -3.573 | 1.361 |
| 07 | -3.325 | -3.903 | -1.298 | 1.3 |
| 08 | -4.4 | -4.4 | 0.167 | 1.027 |
| 09 | 1.276 | -3.903 | -1.328 | -2.034 |
| 10 | -3.573 | 1.281 | -3.903 | -1.044 |
| 11 | 0.551 | -0.841 | -3.903 | 0.595 |
| 12 | -0.938 | 0.133 | -0.918 | 0.726 |
| 13 | 0.63 | -3.126 | -1.818 | 0.651 |