We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFoxa2
ModelFOXA2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusbnhTGTTTACWbW
Best auROC (human)0.977
Best auROC (mouse)0.992
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words500
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
MGIMGI:1347476
EntrezGeneGeneID:15376
(SSTAR profile)
UniProt IDFOXA2_MOUSE
UniProt ACP35583
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.05181
0.0005 6.03961
0.0001 8.129529999999999
GTEx tissue expression atlas Foxa2 expression
Motifs in JASPAR
MA0047.1 (Foxa2; Rattus norvegicus)
MA0047.2 (Foxa2; Mus musculus)
PCM
ACGT
0155.0200.090.0155.0
0284.0179.0127.0110.0
0399.0133.057.0211.0
0423.04.01.0472.0
05152.07.0341.00.0
064.02.02.0492.0
073.01.033.0463.0
080.00.0148.0352.0
09452.01.032.015.0
102.0454.01.043.0
11218.053.01.0228.0
1248.0143.049.0260.0
13236.04.019.0241.0
PWM
ACGT
01-0.8050.465-0.3240.213
02-0.3920.3550.016-0.126
03-0.230.061-0.7710.519
04-1.64-3.126-3.9031.32
050.193-2.6940.996-4.4
06-3.126-3.573-3.5731.361
07-3.325-3.903-1.2981.3
08-4.4-4.40.1671.027
091.276-3.903-1.328-2.034
10-3.5731.281-3.903-1.044
110.551-0.841-3.9030.595
12-0.9380.133-0.9180.726
130.63-3.126-1.8180.651