Check the newest release v12
Model info
Transcription factorFOXC1
(GeneCards)
ModelFOXC1_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusbnhTGTTTACWTAvS
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words26
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXC {3.3.1.3}
HGNCHGNC:3800
EntrezGeneGeneID:2296
(SSTAR profile)
UniProt IDFOXC1_HUMAN
UniProt ACQ12948
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.01861
0.0005 5.9325600000000005
0.0001 7.840260000000001
GTEx tissue expression atlas FOXC1 expression
ReMap ChIP-seq dataset list FOXC1 datasets
Motifs in JASPAR
MA0032.1 (FOXC1; Homo sapiens)
MA0032.2 (FOXC1; Homo sapiens)
PCM
ACGT
013.512.54.55.5
029.02.09.06.0
037.04.02.013.0
040.00.00.026.0
050.00.026.00.0
061.00.00.025.0
071.00.00.025.0
080.00.01.025.0
0925.00.00.01.0
100.019.00.07.0
116.03.00.017.0
120.05.00.021.0
1317.00.00.09.0
1412.05.07.02.0
151.07.015.03.0
PWM
ACGT
01-0.5280.599-0.319-0.147
020.294-0.9550.294-0.071
030.066-0.418-0.9550.636
04-2.195-2.195-2.1951.299
05-2.195-2.1951.299-2.195
06-1.394-2.195-2.1951.261
07-1.394-2.195-2.1951.261
08-2.195-2.195-1.3941.261
091.261-2.195-2.195-1.394
10-2.1950.997-2.1950.066
11-0.071-0.651-2.1950.89
12-2.195-0.23-2.1951.093
130.89-2.195-2.1950.294
140.561-0.230.066-0.955
15-1.3940.0660.771-0.651