We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXC1
(GeneCards)
ModelFOXC1_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusbnhTGTTTACWTAvS
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words26
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXC {3.3.1.3}
HGNCHGNC:3800
EntrezGeneGeneID:2296
(SSTAR profile)
UniProt IDFOXC1_HUMAN
UniProt ACQ12948
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.01861
0.0005 5.9325600000000005
0.0001 7.840260000000001
GTEx tissue expression atlas FOXC1 expression
ReMap ChIP-seq dataset list FOXC1 datasets
Motifs in JASPAR
MA0032.1 (FOXC1; Homo sapiens)
MA0032.2 (FOXC1; Homo sapiens)
PCM
ACGT
013.512.54.55.5
029.02.09.06.0
037.04.02.013.0
040.00.00.026.0
050.00.026.00.0
061.00.00.025.0
071.00.00.025.0
080.00.01.025.0
0925.00.00.01.0
100.019.00.07.0
116.03.00.017.0
120.05.00.021.0
1317.00.00.09.0
1412.05.07.02.0
151.07.015.03.0
PWM
ACGT
01-0.5280.599-0.319-0.147
020.294-0.9550.294-0.071
030.066-0.418-0.9550.636
04-2.195-2.195-2.1951.299
05-2.195-2.1951.299-2.195
06-1.394-2.195-2.1951.261
07-1.394-2.195-2.1951.261
08-2.195-2.195-1.3941.261
091.261-2.195-2.195-1.394
10-2.1950.997-2.1950.066
11-0.071-0.651-2.1950.89
12-2.195-0.23-2.1951.093
130.89-2.195-2.1950.294
140.561-0.230.066-0.955
15-1.3940.0660.771-0.651