Model info
| Transcription factor | Foxc2 | ||||||||
| Model | FOXC2_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KhTTGTTdTGYCAGd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXC {3.3.1.3} | ||||||||
| MGI | MGI:1347481 | ||||||||
| EntrezGene | GeneID:14234 (SSTAR profile) | ||||||||
| UniProt ID | FOXC2_MOUSE | ||||||||
| UniProt AC | Q61850 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Foxc2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.268 | 0.268 | 3.125 | 1.339 |
| 02 | 1.071 | 1.071 | 0.0 | 2.857 |
| 03 | 0.0 | 1.071 | 0.0 | 3.929 |
| 04 | 0.0 | 0.0 | 0.0 | 5.0 |
| 05 | 1.071 | 0.0 | 3.929 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5.0 |
| 07 | 0.0 | 0.0 | 0.0 | 5.0 |
| 08 | 1.071 | 0.0 | 1.071 | 2.857 |
| 09 | 1.786 | 0.0 | 0.0 | 3.214 |
| 10 | 0.0 | 1.786 | 3.214 | 0.0 |
| 11 | 1.071 | 2.143 | 0.0 | 1.786 |
| 12 | 0.0 | 3.214 | 0.0 | 1.786 |
| 13 | 5.0 | 0.0 | 0.0 | 0.0 |
| 14 | 0.0 | 0.714 | 4.286 | 0.0 |
| 15 | 2.411 | 0.268 | 1.339 | 0.982 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.902 | -0.902 | 0.758 | 0.053 |
| 02 | -0.114 | -0.114 | -1.413 | 0.679 |
| 03 | -1.413 | -0.114 | -1.413 | 0.964 |
| 04 | -1.413 | -1.413 | -1.413 | 1.185 |
| 05 | -0.114 | -1.413 | 0.964 | -1.413 |
| 06 | -1.413 | -1.413 | -1.413 | 1.185 |
| 07 | -1.413 | -1.413 | -1.413 | 1.185 |
| 08 | -0.114 | -1.413 | -0.114 | 0.679 |
| 09 | 0.281 | -1.413 | -1.413 | 0.783 |
| 10 | -1.413 | 0.281 | 0.783 | -1.413 |
| 11 | -0.114 | 0.432 | -1.413 | 0.281 |
| 12 | -1.413 | 0.783 | -1.413 | 0.281 |
| 13 | 1.185 | -1.413 | -1.413 | -1.413 |
| 14 | -1.413 | -0.392 | 1.043 | -1.413 |
| 15 | 0.532 | -0.902 | 0.053 | -0.177 |