We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFoxd3
ModelFOXD3_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
B
Motif rank
0
ConsensusnbnWGTTThYhYdvbn
Best auROC (human)
Best auROC (mouse)0.814
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)11
Aligned words415
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXD {3.3.1.4}
MGIMGI:1347473
EntrezGeneGeneID:15221
(SSTAR profile)
UniProt IDFOXD3_MOUSE
UniProt ACQ61060
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.487210000000001
0.0005 12.90271
0.0001 15.734860000000001
GTEx tissue expression atlas Foxd3 expression
Motifs in JASPAR
MA0041.1 (Foxd3; Rattus norvegicus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
019.014.040.020.029.033.03.063.017.024.033.029.01.018.040.042.0
0214.09.017.016.017.020.04.048.025.032.020.039.08.024.044.078.0
0314.08.09.033.08.05.02.070.014.07.02.062.08.09.015.0149.0
043.03.038.00.021.04.04.00.03.00.025.00.029.015.0269.01.0
050.00.00.056.00.00.00.022.05.01.08.0322.00.00.00.01.0
061.01.00.03.00.00.00.01.00.01.01.06.05.016.020.0360.0
071.00.00.05.02.01.00.015.03.00.03.015.011.01.048.0310.0
084.06.02.05.01.00.01.00.024.04.04.019.0156.064.062.063.0
096.0112.013.054.08.051.00.015.011.025.08.025.06.054.015.012.0
1022.04.05.00.097.032.01.0112.09.09.04.014.026.019.014.047.0
1130.030.017.077.07.020.00.037.01.010.01.012.010.040.06.0117.0
1220.04.012.012.061.04.02.033.014.00.06.04.089.08.030.0116.0
1366.013.093.012.05.06.00.05.015.015.014.06.027.036.063.039.0
1414.034.045.020.016.032.05.017.019.066.058.027.07.019.030.06.0
1515.011.014.016.057.038.08.048.048.044.023.023.018.027.09.016.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.032-0.6040.428-0.2560.110.238-2.0530.879-0.415-0.0760.2380.11-2.95-0.3590.4280.476
02-0.604-1.032-0.415-0.474-0.415-0.256-1.7940.609-0.0360.207-0.2560.403-1.145-0.0760.5231.091
03-0.604-1.145-1.0320.238-1.145-1.588-2.4040.984-0.604-1.272-2.4040.863-1.145-1.032-0.5371.736
04-2.053-2.0530.377-4.246-0.208-1.794-1.794-4.246-2.053-4.246-0.036-4.2460.11-0.5372.326-2.95
05-4.246-4.246-4.2460.762-4.246-4.246-4.246-0.162-1.588-2.95-1.1452.506-4.246-4.246-4.246-2.95
06-2.95-2.95-4.246-2.053-4.246-4.246-4.246-2.95-4.246-2.95-2.95-1.417-1.588-0.474-0.2562.617
07-2.95-4.246-4.246-1.588-2.404-2.95-4.246-0.537-2.053-4.246-2.053-0.537-0.839-2.950.6092.468
08-1.794-1.417-2.404-1.588-2.95-4.246-2.95-4.246-0.076-1.794-1.794-0.3061.7820.8950.8630.879
09-1.4171.452-0.6770.726-1.1450.669-4.246-0.537-0.839-0.036-1.145-0.036-1.4170.726-0.537-0.754
10-0.162-1.794-1.588-4.2461.3080.207-2.951.452-1.032-1.032-1.794-0.6040.002-0.306-0.6040.588
110.1440.144-0.4151.079-1.272-0.256-4.2460.351-2.95-0.931-2.95-0.754-0.9310.428-1.4171.495
12-0.256-1.794-0.754-0.7540.847-1.794-2.4040.238-0.604-4.246-1.417-1.7941.223-1.1450.1441.487
130.925-0.6771.267-0.754-1.588-1.417-4.246-1.588-0.537-0.537-0.604-1.4170.040.3240.8790.403
14-0.6040.2670.545-0.256-0.4740.207-1.588-0.415-0.3060.9250.7970.04-1.272-0.3060.144-1.417
15-0.537-0.839-0.604-0.4740.780.377-1.1450.6090.6090.523-0.118-0.118-0.3590.04-1.032-0.474