FOXF1_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

FOXF1
(GeneCards)

Model

FOXF1_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

11

Quality

D

Motif rank

0

Consensus

nTGTTTATbWW

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

8

TF family

Forkhead box (FOX) factors {3.3.1}

TF subfamily

FOXF {3.3.1.6}

HGNC

EntrezGene

GeneID:2294
(SSTAR profile)

UniProt ID

UniProt AC

Q12946
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.84118
0.0005	6.520255000000001
0.0001	7.866545

GTEx tissue expression atlas

FOXF1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	3.324	1.206	1.206	2.265
02	0.0	0.0	0.0	8.0
03	1.059	0.0	6.941	0.0
04	0.0	0.0	0.0	8.0
05	0.0	0.0	0.0	8.0
06	0.0	0.0	0.0	8.0
07	5.882	0.529	1.588	0.0
08	0.0	1.059	0.0	6.941
09	0.147	1.206	1.206	5.441
10	2.118	1.353	0.0	4.529
11	3.471	0.0	0.294	4.235

PWM

	A	C	G	T
01	0.422	-0.379	-0.379	0.1
02	-1.578	-1.578	-1.578	1.218
03	-0.468	-1.578	1.085	-1.578
04	-1.578	-1.578	-1.578	1.218
05	-1.578	-1.578	-1.578	1.218
06	-1.578	-1.578	-1.578	1.218
07	0.932	-0.876	-0.178	-1.578
08	-1.578	-0.468	-1.578	1.085
09	-1.329	-0.379	-0.379	0.861
10	0.046	-0.297	-1.578	0.695
11	0.46	-1.578	-1.13	0.635