Model info
| Transcription factor | Foxf1 | ||||||||
| Model | FOXF1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nTGTTTATbWW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
| TF subfamily | FOXF {3.3.1.6} | ||||||||
| MGI | MGI:1347470 | ||||||||
| EntrezGene | GeneID:15227 (SSTAR profile) | ||||||||
| UniProt ID | FOXF1_MOUSE | ||||||||
| UniProt AC | Q61080 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Foxf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.324 | 1.206 | 1.206 | 2.265 |
| 02 | 0.0 | 0.0 | 0.0 | 8.0 |
| 03 | 1.059 | 0.0 | 6.941 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 8.0 |
| 05 | 0.0 | 0.0 | 0.0 | 8.0 |
| 06 | 0.0 | 0.0 | 0.0 | 8.0 |
| 07 | 5.882 | 0.529 | 1.588 | 0.0 |
| 08 | 0.0 | 1.059 | 0.0 | 6.941 |
| 09 | 0.147 | 1.206 | 1.206 | 5.441 |
| 10 | 2.118 | 1.353 | 0.0 | 4.529 |
| 11 | 3.471 | 0.0 | 0.294 | 4.235 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.422 | -0.379 | -0.379 | 0.1 |
| 02 | -1.578 | -1.578 | -1.578 | 1.218 |
| 03 | -0.468 | -1.578 | 1.085 | -1.578 |
| 04 | -1.578 | -1.578 | -1.578 | 1.218 |
| 05 | -1.578 | -1.578 | -1.578 | 1.218 |
| 06 | -1.578 | -1.578 | -1.578 | 1.218 |
| 07 | 0.932 | -0.876 | -0.178 | -1.578 |
| 08 | -1.578 | -0.468 | -1.578 | 1.085 |
| 09 | -1.329 | -0.379 | -0.379 | 0.861 |
| 10 | 0.046 | -0.297 | -1.578 | 0.695 |
| 11 | 0.46 | -1.578 | -1.13 | 0.635 |