We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorFOXG1
(GeneCards)
ModelFOXG1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusdWTGTTTMYdWdTdKWb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words306
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXG {3.3.1.7}
HGNCHGNC:3811
EntrezGeneGeneID:2290
(SSTAR profile)
UniProt IDFOXG1_HUMAN
UniProt ACP55316
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5099599999999995
0.0005 6.467359999999999
0.0001 8.44811
GTEx tissue expression atlas FOXG1 expression
ReMap ChIP-seq dataset list FOXG1 datasets
Motifs in JASPAR
PCM
ACGT
01110.95247.12157.13194.372
0246.54934.36537.511191.151
0310.26811.1269.181279.0
0431.6916.178265.5286.178
050.00.9722.917305.686
060.00.071.782237.794
071.030.028.659279.887
08212.85250.84733.57812.299
0912.241109.3647.893180.077
1095.729.63190.48893.756
1159.14821.96536.721191.742
12113.43417.61655.256123.269
1319.06117.0026.192267.321
1497.17312.28397.916102.204
1515.18623.13727.313243.939
1673.90416.98724.31194.374
1725.6441.59960.991181.346
PWM
ACGT
010.355-0.485-0.2970.195
02-0.496-0.789-0.7050.893
03-1.908-1.837-2.0051.269
04-0.867-2.3381.22-2.338
05-4.007-3.489-2.8971.36
06-4.007-4.007-0.0741.11
07-3.466-4.007-0.9631.272
081.0-0.411-0.812-1.747
09-1.7520.34-2.1340.834
100.209-0.9310.1540.189
11-0.263-1.215-0.7260.896
120.377-1.42-0.330.459
13-1.347-1.453-2.3361.227
140.224-1.7490.2310.274
15-1.557-1.166-1.0091.136
16-0.045-1.454-1.1190.91
17-1.069-0.605-0.2330.841