FOXQ1_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

FOXQ1
(GeneCards)

Model

FOXQ1_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

C

Motif rank

0

Consensus

nRTTGTTTATKT

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

13

TF family

Forkhead box (FOX) factors {3.3.1}

TF subfamily

FOXQ {3.3.1.17}

HGNC

EntrezGene

GeneID:94234
(SSTAR profile)

UniProt ID

UniProt AC

Q9C009
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.504205000000001
0.0005	6.369905
0.0001	8.094745

GTEx tissue expression atlas

FOXQ1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0040.1 (Foxq1; Rattus norvegicus)

PCM

	A	C	G	T
01	4.0	4.0	1.0	4.0
02	9.0	1.0	3.0	0.0
03	1.0	2.0	0.0	10.0
04	0.0	0.0	0.0	13.0
05	0.0	0.0	13.0	0.0
06	0.0	0.0	0.0	13.0
07	0.0	0.0	0.0	13.0
08	0.0	0.0	0.0	13.0
09	13.0	0.0	0.0	0.0
10	0.0	0.0	1.0	12.0
11	2.0	0.0	3.0	8.0
12	0.0	4.0	0.0	9.0

PWM

	A	C	G	T
01	0.176	0.176	-0.863	0.176
02	0.907	-0.863	-0.066	-1.803
03	-0.863	-0.387	-1.803	1.006
04	-1.803	-1.803	-1.803	1.254
05	-1.803	-1.803	1.254	-1.803
06	-1.803	-1.803	-1.803	1.254
07	-1.803	-1.803	-1.803	1.254
08	-1.803	-1.803	-1.803	1.254
09	1.254	-1.803	-1.803	-1.803
10	-1.803	-1.803	-0.863	1.178
11	-0.387	-1.803	-0.066	0.798
12	-1.803	0.176	-1.803	0.907