We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGABPA
(GeneCards)
ModelGABPA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvvvnvSCGGAAGYRvvn
Best auROC (human)0.991
Best auROC (mouse)0.946
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words501
TF familyEts-related factors {3.5.2}
TF subfamilyEts-like factors {3.5.2.1}
HGNCHGNC:4071
EntrezGeneGeneID:2551
(SSTAR profile)
UniProt IDGABPA_HUMAN
UniProt ACQ06546
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.00666
0.0005 5.50226
0.0001 10.475560000000002
GTEx tissue expression atlas GABPA expression
ReMap ChIP-seq dataset list GABPA datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.027.045.05.031.027.0111.020.019.039.055.022.014.09.025.028.0
0216.033.036.02.015.024.048.015.055.055.0106.020.015.025.032.03.0
0327.026.032.016.025.047.025.040.091.070.051.010.05.021.06.08.0
0474.027.045.02.044.036.067.017.053.011.046.04.015.023.027.09.0
0522.0123.041.00.01.093.03.00.012.0126.045.02.02.028.02.00.0
069.026.01.01.017.0351.02.00.07.082.01.01.01.01.00.00.0
070.00.034.00.00.00.0460.00.00.00.04.00.00.00.02.00.0
080.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.00.0
090.00.00.00.00.00.00.00.0498.02.00.00.00.00.00.00.0
10489.01.01.07.01.01.00.00.00.00.00.00.00.00.00.00.0
1162.012.0416.00.00.00.02.00.00.00.01.00.01.00.06.00.0
123.023.00.037.01.05.01.05.021.068.016.0320.00.00.00.00.0
133.02.020.00.023.05.056.012.06.03.05.03.054.046.0228.034.0
1426.025.032.03.014.019.019.04.0111.063.0120.015.09.015.022.03.0
1538.073.034.015.025.050.026.021.058.060.051.024.01.012.06.06.0
1654.019.038.011.015.038.091.051.015.024.048.030.04.027.017.018.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.302-0.1440.361-1.77-0.008-0.1441.259-0.439-0.490.2190.56-0.346-0.788-1.215-0.22-0.108
02-0.6580.0540.14-2.584-0.721-0.260.425-0.7210.560.561.213-0.439-0.721-0.220.023-2.234
03-0.144-0.1810.023-0.658-0.220.404-0.220.2441.0610.80.485-1.114-1.77-0.392-1.6-1.328
040.855-0.1440.361-2.5840.3390.140.756-0.5990.523-1.0220.383-1.975-0.721-0.302-0.144-1.215
05-0.3461.3610.269-4.4-3.1261.082-2.234-4.4-0.9381.3850.361-2.584-2.584-0.108-2.584-4.4
06-1.215-0.181-3.126-3.126-0.5992.408-2.584-4.4-1.4540.957-3.126-3.126-3.126-3.126-4.4-4.4
07-4.4-4.40.083-4.4-4.4-4.42.678-4.4-4.4-4.4-1.975-4.4-4.4-4.4-2.584-4.4
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.757-2.584-4.4-4.4-4.4-4.4-4.4-4.4
102.739-3.126-3.126-1.454-3.126-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
110.679-0.9382.577-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-3.126-4.4-1.6-4.4
12-2.234-0.302-4.40.167-3.126-1.77-3.126-1.77-0.3920.771-0.6582.315-4.4-4.4-4.4-4.4
13-2.234-2.584-0.439-4.4-0.302-1.770.578-0.938-1.6-2.234-1.77-2.2340.5420.3831.9770.083
14-0.181-0.220.023-2.234-0.788-0.49-0.49-1.9751.2590.6951.336-0.721-1.215-0.721-0.346-2.234
150.1930.8410.083-0.721-0.220.465-0.181-0.3920.6130.6460.485-0.26-3.126-0.938-1.6-1.6
160.542-0.490.193-1.022-0.7210.1931.0610.485-0.721-0.260.425-0.04-1.975-0.144-0.599-0.543