We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGABPA
(GeneCards)
ModelGABPA_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvvnvSCGGAAGYvv
Best auROC (human)0.988
Best auROC (mouse)0.949
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words500
TF familyEts-related factors {3.5.2}
TF subfamilyEts-like factors {3.5.2.1}
HGNCHGNC:4071
EntrezGeneGeneID:2551
(SSTAR profile)
UniProt IDGABPA_HUMAN
UniProt ACQ06546
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.97301
0.0005 4.03316
0.0001 6.1483099999999995
GTEx tissue expression atlas GABPA expression
ReMap ChIP-seq dataset list GABPA datasets
Motifs in JASPAR
MA0062.1 (GABPA; Homo sapiens)
MA0062.2 (Gabpa; Mus musculus)
PCM
ACGT
0191.0113.0242.054.0
02143.0126.0193.038.0
03182.0115.0135.068.0
04215.073.0192.020.0
0549.0306.0135.010.0
0656.0428.013.03.0
074.00.0496.00.0
084.02.0493.01.0
09498.00.02.00.0
10493.01.00.06.0
1153.012.0434.01.0
1249.094.016.0341.0
1389.065.0285.061.0
14144.0135.0192.029.0
PWM
ACGT
01-0.313-0.10.655-0.823
020.1330.0080.43-1.163
030.372-0.0820.076-0.599
040.537-0.5290.425-1.77
05-0.9180.8880.076-2.394
06-0.7881.222-2.163-3.325
07-3.126-4.41.369-4.4
08-3.126-3.5731.363-3.903
091.373-4.4-3.573-4.4
101.363-3.903-4.4-2.819
11-0.841-2.2341.236-3.903
12-0.918-0.281-1.9750.996
13-0.335-0.6430.817-0.705
140.140.0760.425-1.421