GABPA_MOUSE.H11MO.0.A motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

Model

GABPA_MOUSE.H11MO.0.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

14

Quality

A

Motif rank

0

Consensus

vvvvSCGGAAGYRv

Best auROC (human)

0.988

Best auROC (mouse)

0.952

Peak sets in benchmark (human)

92

Peak sets in benchmark (mouse)

8

Aligned words

500

TF family

Ets-related factors {3.5.2}

TF subfamily

Ets-like factors {3.5.2.1}

MGI

EntrezGene

GeneID:14390
(SSTAR profile)

UniProt ID

UniProt AC

Q00422
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	2.5611099999999998
0.0005	3.74591
0.0001	6.097759999999999

GTEx tissue expression atlas

Gabpa expression

Motifs in JASPAR

MA0062.1 (GABPA; Homo sapiens)

MA0062.2 (Gabpa; Mus musculus)

PCM

	A	C	G	T
01	88.0	97.0	250.0	65.0
02	101.0	109.0	251.0	39.0
03	196.0	148.0	119.0	37.0
04	228.0	85.0	169.0	18.0
05	44.0	319.0	136.0	1.0
06	70.0	421.0	7.0	2.0
07	0.0	0.0	500.0	0.0
08	0.0	0.0	500.0	0.0
09	499.0	0.0	0.0	1.0
10	491.0	1.0	1.0	7.0
11	72.0	5.0	423.0	0.0
12	37.0	97.0	26.0	340.0
13	74.0	60.0	308.0	58.0
14	144.0	132.0	192.0	32.0

PWM

	A	C	G	T
01	-0.346	-0.25	0.687	-0.643
02	-0.21	-0.135	0.691	-1.138
03	0.445	0.167	-0.049	-1.189
04	0.595	-0.38	0.298	-1.868
05	-1.022	0.929	0.083	-3.903
06	-0.57	1.206	-2.694	-3.573
07	-4.4	-4.4	1.377	-4.4
08	-4.4	-4.4	1.377	-4.4
09	1.375	-4.4	-4.4	-3.903
10	1.359	-3.903	-3.903	-2.694
11	-0.543	-2.961	1.21	-4.4
12	-1.189	-0.25	-1.525	0.993
13	-0.516	-0.721	0.894	-0.754
14	0.14	0.054	0.425	-1.328