We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA1
(GeneCards)
ModelGATA1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensusnvbKbnnnnnnvAGATAAvvn
Best auROC (human)0.987
Best auROC (mouse)0.962
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4170
EntrezGeneGeneID:2623
(SSTAR profile)
UniProt IDGATA1_HUMAN
UniProt ACP15976
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.94501
0.0005 10.45686
0.0001 15.10351
GTEx tissue expression atlas GATA1 expression
ReMap ChIP-seq dataset list GATA1 datasets
Motifs in JASPAR
MA0035.1 (Gata1; Mus musculus)
MA0140.1 (Tal1::Gata1; Mus musculus)
MA0035.2 (Gata1; Mus musculus)
MA0035.3 (Gata1; Mus musculus)
MA0140.2 (GATA1::TAL1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.024.035.08.031.049.06.038.020.068.038.016.011.078.045.010.0
0218.018.018.031.015.027.02.0175.05.031.016.072.02.015.044.011.0
038.02.026.04.021.05.05.060.02.08.042.028.06.012.0248.023.0
042.07.023.05.017.03.02.05.034.0102.0113.072.01.06.091.017.0
0510.09.031.04.043.028.04.043.026.066.074.063.016.016.039.028.0
0623.021.036.015.047.028.012.032.041.047.039.021.020.024.064.030.0
0737.019.054.021.034.039.010.037.039.025.061.026.015.013.044.026.0
0827.025.062.011.032.018.011.035.032.049.067.021.012.024.053.021.0
0927.021.041.014.035.032.011.038.037.054.070.032.012.018.030.028.0
1035.022.039.015.064.028.07.026.041.039.050.022.024.015.049.024.0
1121.072.060.011.015.065.011.013.037.051.050.07.04.032.044.07.0
1259.00.00.018.0142.04.00.074.0136.03.01.025.023.02.00.013.0
130.00.0360.00.00.00.09.00.00.00.01.00.00.00.0130.00.0
140.00.00.00.00.00.00.00.0500.00.00.00.00.00.00.00.0
151.01.00.0498.00.00.00.00.00.00.00.00.00.00.00.00.0
161.00.00.00.01.00.00.00.00.00.00.00.0468.01.03.026.0
17416.06.042.06.00.00.01.00.02.00.01.00.024.00.00.02.0
18103.060.0261.018.01.01.02.02.07.013.011.013.00.01.07.00.0
1929.023.052.07.043.011.09.012.083.070.0115.013.03.02.025.03.0
2050.040.045.023.054.022.05.025.069.045.062.025.04.010.013.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.302-0.260.112-1.328-0.0080.445-1.60.193-0.4390.7710.193-0.658-1.0220.9070.361-1.114
02-0.543-0.543-0.543-0.008-0.721-0.144-2.5841.713-1.77-0.008-0.6580.828-2.584-0.7210.339-1.022
03-1.328-2.584-0.181-1.975-0.392-1.77-1.770.646-2.584-1.3280.293-0.108-1.6-0.9382.061-0.302
04-2.584-1.454-0.302-1.77-0.599-2.234-2.584-1.770.0831.1741.2760.828-3.126-1.61.061-0.599
05-1.114-1.215-0.008-1.9750.316-0.108-1.9750.316-0.1810.7410.8550.695-0.658-0.6580.219-0.108
06-0.302-0.3920.14-0.7210.404-0.108-0.9380.0230.2690.4040.219-0.392-0.439-0.260.711-0.04
070.167-0.490.542-0.3920.0830.219-1.1140.1670.219-0.220.663-0.181-0.721-0.860.339-0.181
08-0.144-0.220.679-1.0220.023-0.543-1.0220.1120.0230.4450.756-0.392-0.938-0.260.523-0.392
09-0.144-0.3920.269-0.7880.1120.023-1.0220.1930.1670.5420.80.023-0.938-0.543-0.04-0.108
100.112-0.3460.219-0.7210.711-0.108-1.454-0.1810.2690.2190.465-0.346-0.26-0.7210.445-0.26
11-0.3920.8280.646-1.022-0.7210.726-1.022-0.860.1670.4850.465-1.454-1.9750.0230.339-1.454
120.63-4.4-4.4-0.5431.504-1.975-4.40.8551.461-2.234-3.126-0.22-0.302-2.584-4.4-0.86
13-4.4-4.42.433-4.4-4.4-4.4-1.215-4.4-4.4-4.4-3.126-4.4-4.4-4.41.416-4.4
14-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4-4.4-4.4
15-3.126-3.126-4.42.757-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
16-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.695-3.126-2.234-0.181
172.577-1.60.293-1.6-4.4-4.4-3.126-4.4-2.584-4.4-3.126-4.4-0.26-4.4-4.4-2.584
181.1840.6462.112-0.543-3.126-3.126-2.584-2.584-1.454-0.86-1.022-0.86-4.4-3.126-1.454-4.4
19-0.074-0.3020.504-1.4540.316-1.022-1.215-0.9380.9690.81.294-0.86-2.234-2.584-0.22-2.234
200.4650.2440.361-0.3020.542-0.346-1.77-0.220.7850.3610.679-0.22-1.975-1.114-0.86-1.328