Model info
| Transcription factor | GATA1 (GeneCards) | ||||||||
| Model | GATA1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbKbnnnnnnvWGATAAvv | ||||||||
| Best auROC (human) | 0.981 | ||||||||
| Best auROC (mouse) | 0.943 | ||||||||
| Peak sets in benchmark (human) | 48 | ||||||||
| Peak sets in benchmark (mouse) | 122 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4170 | ||||||||
| EntrezGene | GeneID:2623 (SSTAR profile) | ||||||||
| UniProt ID | GATA1_HUMAN | ||||||||
| UniProt AC | P15976 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA1 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 96.0 | 202.0 | 103.0 | 99.0 |
| 02 | 58.0 | 72.0 | 95.0 | 275.0 |
| 03 | 28.0 | 39.0 | 320.0 | 113.0 |
| 04 | 59.0 | 103.0 | 195.0 | 143.0 |
| 05 | 97.0 | 157.0 | 141.0 | 105.0 |
| 06 | 134.0 | 123.0 | 139.0 | 104.0 |
| 07 | 112.0 | 105.0 | 184.0 | 99.0 |
| 08 | 131.0 | 84.0 | 170.0 | 115.0 |
| 09 | 107.0 | 112.0 | 157.0 | 124.0 |
| 10 | 166.0 | 94.0 | 162.0 | 78.0 |
| 11 | 92.0 | 194.0 | 161.0 | 53.0 |
| 12 | 360.0 | 10.0 | 4.0 | 126.0 |
| 13 | 3.0 | 0.0 | 497.0 | 0.0 |
| 14 | 498.0 | 0.0 | 0.0 | 2.0 |
| 15 | 1.0 | 0.0 | 6.0 | 493.0 |
| 16 | 473.0 | 2.0 | 7.0 | 18.0 |
| 17 | 429.0 | 8.0 | 45.0 | 18.0 |
| 18 | 107.0 | 77.0 | 277.0 | 39.0 |
| 19 | 176.0 | 94.0 | 173.0 | 57.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.26 | 0.475 | -0.191 | -0.23 |
| 02 | -0.754 | -0.543 | -0.271 | 0.782 |
| 03 | -1.454 | -1.138 | 0.932 | -0.1 |
| 04 | -0.737 | -0.191 | 0.44 | 0.133 |
| 05 | -0.25 | 0.225 | 0.119 | -0.172 |
| 06 | 0.069 | -0.016 | 0.105 | -0.181 |
| 07 | -0.108 | -0.172 | 0.383 | -0.23 |
| 08 | 0.046 | -0.392 | 0.304 | -0.082 |
| 09 | -0.153 | -0.108 | 0.225 | -0.008 |
| 10 | 0.281 | -0.281 | 0.256 | -0.464 |
| 11 | -0.302 | 0.435 | 0.25 | -0.841 |
| 12 | 1.05 | -2.394 | -3.126 | 0.008 |
| 13 | -3.325 | -4.4 | 1.371 | -4.4 |
| 14 | 1.373 | -4.4 | -4.4 | -3.573 |
| 15 | -3.903 | -4.4 | -2.819 | 1.363 |
| 16 | 1.322 | -3.573 | -2.694 | -1.868 |
| 17 | 1.224 | -2.584 | -1.0 | -1.868 |
| 18 | -0.153 | -0.477 | 0.789 | -1.138 |
| 19 | 0.339 | -0.281 | 0.322 | -0.771 |