Model info
| Transcription factor | GATA1 (GeneCards) | ||||||||
| Model | GATA1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dvWGATAASvv | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | 0.946 | ||||||||
| Peak sets in benchmark (human) | 48 | ||||||||
| Peak sets in benchmark (mouse) | 122 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4170 | ||||||||
| EntrezGene | GeneID:2623 (SSTAR profile) | ||||||||
| UniProt ID | GATA1_HUMAN | ||||||||
| UniProt AC | P15976 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA1 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 173.0 | 58.0 | 152.0 | 117.0 |
| 02 | 76.0 | 221.0 | 153.0 | 50.0 |
| 03 | 350.0 | 7.0 | 4.0 | 139.0 |
| 04 | 0.0 | 0.0 | 499.0 | 1.0 |
| 05 | 500.0 | 0.0 | 0.0 | 0.0 |
| 06 | 3.0 | 4.0 | 0.0 | 493.0 |
| 07 | 485.0 | 4.0 | 3.0 | 8.0 |
| 08 | 461.0 | 2.0 | 29.0 | 8.0 |
| 09 | 70.0 | 87.0 | 332.0 | 11.0 |
| 10 | 186.0 | 100.0 | 170.0 | 44.0 |
| 11 | 170.0 | 108.0 | 161.0 | 61.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.322 | -0.754 | 0.193 | -0.065 |
| 02 | -0.49 | 0.565 | 0.2 | -0.898 |
| 03 | 1.022 | -2.694 | -3.126 | 0.105 |
| 04 | -4.4 | -4.4 | 1.375 | -3.903 |
| 05 | 1.377 | -4.4 | -4.4 | -4.4 |
| 06 | -3.325 | -3.126 | -4.4 | 1.363 |
| 07 | 1.347 | -3.126 | -3.325 | -2.584 |
| 08 | 1.296 | -3.573 | -1.421 | -2.584 |
| 09 | -0.57 | -0.357 | 0.969 | -2.311 |
| 10 | 0.393 | -0.22 | 0.304 | -1.022 |
| 11 | 0.304 | -0.144 | 0.25 | -0.705 |