We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA1
(GeneCards)
ModelGATA1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdvWGATAASvv
Best auROC (human)0.983
Best auROC (mouse)0.946
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4170
EntrezGeneGeneID:2623
(SSTAR profile)
UniProt IDGATA1_HUMAN
UniProt ACP15976
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.692175000000001
0.0005 5.930955
0.0001 8.11995
GTEx tissue expression atlas GATA1 expression
ReMap ChIP-seq dataset list GATA1 datasets
Motifs in JASPAR
PCM
ACGT
01173.058.0152.0117.0
0276.0221.0153.050.0
03350.07.04.0139.0
040.00.0499.01.0
05500.00.00.00.0
063.04.00.0493.0
07485.04.03.08.0
08461.02.029.08.0
0970.087.0332.011.0
10186.0100.0170.044.0
11170.0108.0161.061.0
PWM
ACGT
010.322-0.7540.193-0.065
02-0.490.5650.2-0.898
031.022-2.694-3.1260.105
04-4.4-4.41.375-3.903
051.377-4.4-4.4-4.4
06-3.325-3.126-4.41.363
071.347-3.126-3.325-2.584
081.296-3.573-1.421-2.584
09-0.57-0.3570.969-2.311
100.393-0.220.304-1.022
110.304-0.1440.25-0.705