We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGata1
ModelGATA1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnbbbnnnnndvWGATAAvvn
Best auROC (human)0.983
Best auROC (mouse)0.971
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words505
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
MGIMGI:95661
EntrezGeneGeneID:14460
(SSTAR profile)
UniProt IDGATA1_MOUSE
UniProt ACP17679
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.61611
0.0005 11.04141
0.0001 15.20461
GTEx tissue expression atlas Gata1 expression
Motifs in JASPAR
MA0035.1 (Gata1; Mus musculus)
MA0140.1 (Tal1::Gata1; Mus musculus)
MA0035.2 (Gata1; Mus musculus)
MA0035.3 (Gata1; Mus musculus)
MA0140.2 (GATA1::TAL1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.018.028.024.019.044.06.0113.012.049.026.047.04.024.062.011.0
027.06.032.03.023.024.05.083.017.030.031.044.04.013.0162.016.0
032.07.034.08.020.014.010.029.019.064.089.058.04.027.0101.014.0
046.011.023.05.041.021.06.044.032.069.078.055.06.018.072.013.0
0513.024.035.013.032.045.013.029.033.051.065.030.07.022.061.027.0
0614.018.040.013.041.040.017.044.036.043.064.031.011.029.038.021.0
0718.022.048.014.035.041.013.041.030.043.066.020.04.029.057.019.0
0824.018.031.014.030.044.017.044.036.048.066.034.08.027.041.018.0
0922.012.061.03.065.024.09.039.038.023.071.023.025.08.060.017.0
1015.060.063.012.011.041.08.07.040.083.064.014.011.025.040.06.0
1156.02.00.019.0113.04.00.092.0115.09.04.047.031.01.00.07.0
120.00.0314.01.00.00.016.00.00.00.04.00.00.00.0165.00.0
130.00.00.00.00.00.00.00.0497.02.00.00.01.00.00.00.0
140.01.01.0496.00.00.00.02.00.00.00.00.00.00.00.00.0
150.00.00.00.01.00.00.00.01.00.00.00.0470.00.02.026.0
16388.08.058.018.00.00.00.00.01.00.00.01.026.00.00.00.0
1769.067.0245.034.00.03.04.01.010.012.028.08.01.03.015.00.0
1819.023.029.09.047.016.011.011.075.078.0123.016.08.05.028.02.0
1941.035.053.020.048.034.011.029.056.044.062.029.012.012.09.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.86-0.543-0.108-0.26-0.490.339-1.61.276-0.9380.445-0.1810.404-1.975-0.260.679-1.022
02-1.454-1.60.023-2.234-0.302-0.26-1.770.969-0.599-0.04-0.0080.339-1.975-0.861.636-0.658
03-2.584-1.4540.083-1.328-0.439-0.788-1.114-0.074-0.490.7111.0390.613-1.975-0.1441.165-0.788
04-1.6-1.022-0.302-1.770.269-0.392-1.60.3390.0230.7850.9070.56-1.6-0.5430.828-0.86
05-0.86-0.260.112-0.860.0230.361-0.86-0.0740.0540.4850.726-0.04-1.454-0.3460.663-0.144
06-0.788-0.5430.244-0.860.2690.244-0.5990.3390.140.3160.711-0.008-1.022-0.0740.193-0.392
07-0.543-0.3460.425-0.7880.1120.269-0.860.269-0.040.3160.741-0.439-1.975-0.0740.595-0.49
08-0.26-0.543-0.008-0.788-0.040.339-0.5990.3390.140.4250.7410.083-1.328-0.1440.269-0.543
09-0.346-0.9380.663-2.2340.726-0.26-1.2150.2190.193-0.3020.814-0.302-0.22-1.3280.646-0.599
10-0.7210.6460.695-0.938-1.0220.269-1.328-1.4540.2440.9690.711-0.788-1.022-0.220.244-1.6
110.578-2.584-4.4-0.491.276-1.975-4.41.0721.294-1.215-1.9750.404-0.008-3.126-4.4-1.454
12-4.4-4.42.296-3.126-4.4-4.4-0.658-4.4-4.4-4.4-1.975-4.4-4.4-4.41.654-4.4
13-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.755-2.584-4.4-4.4-3.126-4.4-4.4-4.4
14-4.4-3.126-3.1262.753-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
15-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.42.699-4.4-2.584-0.181
162.508-1.3280.613-0.543-4.4-4.4-4.4-4.4-3.126-4.4-4.4-3.126-0.181-4.4-4.4-4.4
170.7850.7562.0480.083-4.4-2.234-1.975-3.126-1.114-0.938-0.108-1.328-3.126-2.234-0.721-4.4
18-0.49-0.302-0.074-1.2150.404-0.658-1.022-1.0220.8680.9071.361-0.658-1.328-1.77-0.108-2.584
190.2690.1120.523-0.4390.4250.083-1.022-0.0740.5780.3390.679-0.074-0.938-0.938-1.215-1.77