Model info
| Transcription factor | Gata1 | ||||||||
| Model | GATA1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bKbnnvnndvWGATAASvv | ||||||||
| Best auROC (human) | 0.964 | ||||||||
| Best auROC (mouse) | 0.951 | ||||||||
| Peak sets in benchmark (human) | 48 | ||||||||
| Peak sets in benchmark (mouse) | 122 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| MGI | MGI:95661 | ||||||||
| EntrezGene | GeneID:14460 (SSTAR profile) | ||||||||
| UniProt ID | GATA1_MOUSE | ||||||||
| UniProt AC | P17679 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gata1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 50.0 | 108.0 | 95.0 | 247.0 |
| 02 | 31.0 | 60.0 | 300.0 | 109.0 |
| 03 | 54.0 | 138.0 | 215.0 | 93.0 |
| 04 | 97.0 | 117.0 | 185.0 | 101.0 |
| 05 | 98.0 | 105.0 | 201.0 | 96.0 |
| 06 | 81.0 | 139.0 | 200.0 | 80.0 |
| 07 | 116.0 | 104.0 | 184.0 | 96.0 |
| 08 | 121.0 | 122.0 | 147.0 | 110.0 |
| 09 | 144.0 | 74.0 | 184.0 | 98.0 |
| 10 | 77.0 | 229.0 | 159.0 | 35.0 |
| 11 | 324.0 | 24.0 | 11.0 | 141.0 |
| 12 | 1.0 | 2.0 | 495.0 | 2.0 |
| 13 | 488.0 | 3.0 | 6.0 | 3.0 |
| 14 | 27.0 | 9.0 | 20.0 | 444.0 |
| 15 | 462.0 | 4.0 | 7.0 | 27.0 |
| 16 | 396.0 | 6.0 | 76.0 | 22.0 |
| 17 | 79.0 | 97.0 | 303.0 | 21.0 |
| 18 | 164.0 | 103.0 | 208.0 | 25.0 |
| 19 | 154.0 | 134.0 | 162.0 | 50.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.898 | -0.144 | -0.271 | 0.675 |
| 02 | -1.358 | -0.721 | 0.868 | -0.135 |
| 03 | -0.823 | 0.098 | 0.537 | -0.291 |
| 04 | -0.25 | -0.065 | 0.388 | -0.21 |
| 05 | -0.24 | -0.172 | 0.47 | -0.26 |
| 06 | -0.427 | 0.105 | 0.465 | -0.439 |
| 07 | -0.074 | -0.181 | 0.383 | -0.26 |
| 08 | -0.032 | -0.024 | 0.16 | -0.126 |
| 09 | 0.14 | -0.516 | 0.383 | -0.24 |
| 10 | -0.477 | 0.6 | 0.238 | -1.242 |
| 11 | 0.945 | -1.6 | -2.311 | 0.119 |
| 12 | -3.903 | -3.573 | 1.367 | -3.573 |
| 13 | 1.353 | -3.325 | -2.819 | -3.325 |
| 14 | -1.489 | -2.484 | -1.77 | 1.259 |
| 15 | 1.298 | -3.126 | -2.694 | -1.489 |
| 16 | 1.145 | -2.819 | -0.49 | -1.681 |
| 17 | -0.452 | -0.25 | 0.878 | -1.725 |
| 18 | 0.269 | -0.191 | 0.504 | -1.561 |
| 19 | 0.206 | 0.069 | 0.256 | -0.898 |