Model info
| Transcription factor | Gata1 | ||||||||
| Model | GATA1_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dbAGATAASvv | ||||||||
| Best auROC (human) | 0.972 | ||||||||
| Best auROC (mouse) | 0.95 | ||||||||
| Peak sets in benchmark (human) | 48 | ||||||||
| Peak sets in benchmark (mouse) | 122 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| MGI | MGI:95661 | ||||||||
| EntrezGene | GeneID:14460 (SSTAR profile) | ||||||||
| UniProt ID | GATA1_MOUSE | ||||||||
| UniProt AC | P17679 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gata1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 149.0 | 75.0 | 185.0 | 91.0 |
| 02 | 65.0 | 193.0 | 173.0 | 69.0 |
| 03 | 363.0 | 8.0 | 3.0 | 126.0 |
| 04 | 0.0 | 0.0 | 499.0 | 1.0 |
| 05 | 497.0 | 1.0 | 0.0 | 2.0 |
| 06 | 0.0 | 5.0 | 3.0 | 492.0 |
| 07 | 489.0 | 2.0 | 0.0 | 9.0 |
| 08 | 420.0 | 1.0 | 69.0 | 10.0 |
| 09 | 70.0 | 93.0 | 316.0 | 21.0 |
| 10 | 179.0 | 122.0 | 171.0 | 28.0 |
| 11 | 166.0 | 99.0 | 168.0 | 67.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.174 | -0.503 | 0.388 | -0.313 |
| 02 | -0.643 | 0.43 | 0.322 | -0.584 |
| 03 | 1.058 | -2.584 | -3.325 | 0.008 |
| 04 | -4.4 | -4.4 | 1.375 | -3.903 |
| 05 | 1.371 | -3.903 | -4.4 | -3.573 |
| 06 | -4.4 | -2.961 | -3.325 | 1.361 |
| 07 | 1.355 | -3.573 | -4.4 | -2.484 |
| 08 | 1.203 | -3.903 | -0.584 | -2.394 |
| 09 | -0.57 | -0.291 | 0.92 | -1.725 |
| 10 | 0.355 | -0.024 | 0.31 | -1.454 |
| 11 | 0.281 | -0.23 | 0.293 | -0.613 |