We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA2
(GeneCards)
ModelGATA2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdvAGATAASvd
Best auROC (human)0.946
Best auROC (mouse)0.963
Peak sets in benchmark (human)84
Peak sets in benchmark (mouse)54
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4171
EntrezGeneGeneID:2624
(SSTAR profile)
UniProt IDGATA2_HUMAN
UniProt ACP23769
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.32007
0.0005 6.13924
0.0001 7.822125
GTEx tissue expression atlas GATA2 expression
ReMap ChIP-seq dataset list GATA2 datasets
Motifs in JASPAR
MA0036.1 (GATA2; Homo sapiens)
MA0036.2 (GATA2; Homo sapiens)
MA0036.3 (GATA2; Homo sapiens)
PCM
ACGT
01175.058.0166.0101.0
0282.0218.0174.026.0
03376.05.03.0116.0
040.01.0497.02.0
05489.07.03.01.0
068.020.024.0448.0
07431.025.015.029.0
08385.011.093.011.0
0974.0120.0284.022.0
10209.087.0185.019.0
11209.072.0137.082.0
PWM
ACGT
010.333-0.7540.281-0.21
02-0.4150.5510.327-1.525
031.093-2.961-3.325-0.074
04-4.4-3.9031.371-3.573
051.355-2.694-3.325-3.903
06-2.584-1.77-1.61.268
071.229-1.561-2.034-1.421
081.117-2.311-0.291-2.311
09-0.516-0.040.814-1.681
100.509-0.3570.388-1.818
110.509-0.5430.091-0.415