Model info
| Transcription factor | GATA2 (GeneCards) | ||||||||
| Model | GATA2_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dvAGATAASvd | ||||||||
| Best auROC (human) | 0.946 | ||||||||
| Best auROC (mouse) | 0.963 | ||||||||
| Peak sets in benchmark (human) | 84 | ||||||||
| Peak sets in benchmark (mouse) | 54 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4171 | ||||||||
| EntrezGene | GeneID:2624 (SSTAR profile) | ||||||||
| UniProt ID | GATA2_HUMAN | ||||||||
| UniProt AC | P23769 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA2 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 175.0 | 58.0 | 166.0 | 101.0 |
| 02 | 82.0 | 218.0 | 174.0 | 26.0 |
| 03 | 376.0 | 5.0 | 3.0 | 116.0 |
| 04 | 0.0 | 1.0 | 497.0 | 2.0 |
| 05 | 489.0 | 7.0 | 3.0 | 1.0 |
| 06 | 8.0 | 20.0 | 24.0 | 448.0 |
| 07 | 431.0 | 25.0 | 15.0 | 29.0 |
| 08 | 385.0 | 11.0 | 93.0 | 11.0 |
| 09 | 74.0 | 120.0 | 284.0 | 22.0 |
| 10 | 209.0 | 87.0 | 185.0 | 19.0 |
| 11 | 209.0 | 72.0 | 137.0 | 82.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.333 | -0.754 | 0.281 | -0.21 |
| 02 | -0.415 | 0.551 | 0.327 | -1.525 |
| 03 | 1.093 | -2.961 | -3.325 | -0.074 |
| 04 | -4.4 | -3.903 | 1.371 | -3.573 |
| 05 | 1.355 | -2.694 | -3.325 | -3.903 |
| 06 | -2.584 | -1.77 | -1.6 | 1.268 |
| 07 | 1.229 | -1.561 | -2.034 | -1.421 |
| 08 | 1.117 | -2.311 | -0.291 | -2.311 |
| 09 | -0.516 | -0.04 | 0.814 | -1.681 |
| 10 | 0.509 | -0.357 | 0.388 | -1.818 |
| 11 | 0.509 | -0.543 | 0.091 | -0.415 |