Transcription factor | GATA2 (GeneCards) | ||||||||
Model | GATA2_HUMAN.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | dvAGATAASvd | ||||||||
Best auROC (human) | 0.946 | ||||||||
Best auROC (mouse) | 0.963 | ||||||||
Peak sets in benchmark (human) | 84 | ||||||||
Peak sets in benchmark (mouse) | 54 | ||||||||
Aligned words | 500 | ||||||||
TF family | GATA-type zinc fingers {2.2.1} | ||||||||
TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
HGNC | HGNC:4171 | ||||||||
EntrezGene | GeneID:2624 (SSTAR profile) | ||||||||
UniProt ID | GATA2_HUMAN | ||||||||
UniProt AC | P23769 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | GATA2 expression | ||||||||
ReMap ChIP-seq dataset list | GATA2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 175.0 | 58.0 | 166.0 | 101.0 |
02 | 82.0 | 218.0 | 174.0 | 26.0 |
03 | 376.0 | 5.0 | 3.0 | 116.0 |
04 | 0.0 | 1.0 | 497.0 | 2.0 |
05 | 489.0 | 7.0 | 3.0 | 1.0 |
06 | 8.0 | 20.0 | 24.0 | 448.0 |
07 | 431.0 | 25.0 | 15.0 | 29.0 |
08 | 385.0 | 11.0 | 93.0 | 11.0 |
09 | 74.0 | 120.0 | 284.0 | 22.0 |
10 | 209.0 | 87.0 | 185.0 | 19.0 |
11 | 209.0 | 72.0 | 137.0 | 82.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.333 | -0.754 | 0.281 | -0.21 |
02 | -0.415 | 0.551 | 0.327 | -1.525 |
03 | 1.093 | -2.961 | -3.325 | -0.074 |
04 | -4.4 | -3.903 | 1.371 | -3.573 |
05 | 1.355 | -2.694 | -3.325 | -3.903 |
06 | -2.584 | -1.77 | -1.6 | 1.268 |
07 | 1.229 | -1.561 | -2.034 | -1.421 |
08 | 1.117 | -2.311 | -0.291 | -2.311 |
09 | -0.516 | -0.04 | 0.814 | -1.681 |
10 | 0.509 | -0.357 | 0.388 | -1.818 |
11 | 0.509 | -0.543 | 0.091 | -0.415 |