GATA3_HUMAN.H11DI.0.A motif - HOmo sapiens COmprehensive MOdel COllection

Transcription factor

GATA3
(GeneCards)

Model

GATA3_HUMAN.H11DI.0.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv10

Model length

Quality

Motif rank

Consensus

ndnddndbdnnvAGATAAvddnn

Best auROC (human)

0.95

Best auROC (mouse)

0.947

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

504

TF family

GATA-type zinc fingers {2.2.1}

TF subfamily

Two zinc-finger GATA factors {2.2.1.1}

HGNC

HGNC:4172

EntrezGene

GeneID:2625
(SSTAR profile)

UniProt ID

GATA3_HUMAN

UniProt AC

P23771
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	10.692210000000001
0.0005	12.430860000000001
0.0001	15.67101

GTEx tissue expression atlas

GATA3 expression

ReMap ChIP-seq dataset list

GATA3 datasets

Motifs in JASPAR

MA0037.1 (GATA3; Homo sapiens)

MA0037.2 (GATA3; Homo sapiens)

MA0037.3 (GATA3; Homo sapiens)

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	19.17	15.205	108.949	12.47	24.479	19.54	7.063	23.19	64.288	24.588	31.911	15.715	19.176	10.16	83.556	20.539
02	15.684	22.652	40.5	48.277	23.791	13.03	10.927	21.746	115.136	25.056	73.712	17.575	14.885	11.765	24.009	21.256
03	33.885	19.775	35.729	80.106	30.944	12.551	6.214	22.794	100.392	14.098	13.04	21.616	21.916	23.812	39.557	23.57
04	86.389	9.355	64.357	27.037	31.986	10.882	7.111	20.255	48.936	15.232	17.072	13.3	20.665	24.349	69.484	33.588
05	17.627	16.649	77.439	76.262	17.796	20.855	9.516	11.651	76.118	28.854	28.36	24.692	7.514	26.08	42.01	18.576
06	11.588	11.087	31.361	65.019	37.742	18.056	5.437	31.204	67.31	21.949	35.801	32.266	69.408	16.452	27.018	18.302
07	23.592	19.183	37.926	105.348	18.944	12.438	5.905	30.257	28.749	20.12	35.805	14.942	12.071	35.486	62.387	36.847
08	18.067	10.962	38.572	15.755	35.571	13.89	6.793	30.973	33.854	40.797	48.08	19.291	22.363	27.428	108.953	28.65
09	27.933	30.74	32.631	18.551	39.862	13.881	6.665	32.669	32.132	54.618	89.233	26.416	10.018	28.78	26.134	29.736
10	31.284	25.621	43.406	9.633	68.453	16.356	5.888	37.323	28.335	74.182	37.49	14.656	27.34	11.673	52.591	15.767
11	38.077	50.734	55.925	10.676	75.434	29.315	15.418	7.666	26.971	61.682	34.576	16.148	9.539	36.463	29.357	2.02
12	134.746	0.883	2.728	11.663	99.825	3.833	0.0	74.536	117.608	1.908	0.0	15.76	20.589	0.0	0.0	15.92
13	0.0	0.0	372.769	0.0	0.0	0.0	6.624	0.0	0.0	0.0	2.728	0.0	0.0	0.0	117.879	0.0
14	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	496.026	1.004	2.971	0.0	0.0	0.0	0.0	0.0
15	95.521	8.596	2.985	388.923	1.004	0.0	0.0	0.0	0.0	0.0	0.0	2.971	0.0	0.0	0.0	0.0
16	88.005	3.808	1.86	2.852	8.596	0.0	0.0	0.0	2.985	0.0	0.0	0.0	343.67	1.915	1.803	44.507
17	348.128	14.352	67.878	12.899	3.867	0.0	0.935	0.921	2.759	0.903	0.0	0.0	36.264	0.0	11.096	0.0
18	65.066	127.783	184.535	13.633	5.654	7.769	0.887	0.945	13.9	28.01	29.587	8.413	0.0	2.925	10.894	0.0
19	26.459	11.925	37.237	8.998	73.53	22.814	9.602	60.541	110.309	40.517	55.803	19.273	10.79	0.0	11.172	1.029
20	66.535	21.0	63.516	70.037	47.864	14.045	7.903	5.445	61.27	20.359	23.934	8.25	0.988	6.562	72.482	9.809
21	28.37	28.741	32.078	87.469	24.633	12.681	5.577	19.075	81.852	30.574	32.719	22.69	3.126	71.363	8.775	10.275
22	77.414	29.28	20.531	10.757	44.35	14.384	9.938	74.686	19.574	34.703	16.407	8.465	13.33	74.957	34.194	17.028

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	-0.481	-0.707	1.24	-0.9	-0.241	-0.462	-1.446	-0.294	0.715	-0.236	0.021	-0.675	-0.481	-1.098	0.976	-0.413
02	-0.677	-0.317	0.256	0.431	-0.269	-0.858	-1.028	-0.357	1.295	-0.218	0.851	-0.566	-0.728	-0.957	-0.26	-0.38
03	0.08	-0.451	0.132	0.934	-0.01	-0.894	-1.567	-0.311	1.159	-0.781	-0.857	-0.363	-0.35	-0.268	0.233	-0.278
04	1.009	-1.178	0.716	-0.143	0.023	-1.032	-1.44	-0.427	0.444	-0.706	-0.594	-0.838	-0.407	-0.246	0.792	0.071
05	-0.563	-0.619	0.9	0.885	-0.554	-0.398	-1.161	-0.966	0.883	-0.079	-0.096	-0.232	-1.387	-0.178	0.293	-0.512
06	-0.971	-1.014	0.004	0.726	0.187	-0.54	-1.692	-0.001	0.761	-0.348	0.134	0.032	0.791	-0.631	-0.144	-0.526
07	-0.277	-0.48	0.191	1.207	-0.493	-0.903	-1.615	-0.032	-0.082	-0.434	0.135	-0.725	-0.932	0.126	0.685	0.163
08	-0.539	-1.025	0.208	-0.673	0.128	-0.796	-1.483	-0.009	0.079	0.264	0.427	-0.475	-0.33	-0.129	1.24	-0.086
09	-0.111	-0.016	0.043	-0.513	0.241	-0.796	-1.501	0.044	0.027	0.553	1.041	-0.166	-1.112	-0.081	-0.176	-0.049
10	0.001	-0.196	0.325	-1.15	0.777	-0.636	-1.618	0.176	-0.097	0.857	0.18	-0.743	-0.132	-0.964	0.516	-0.672
11	0.195	0.48	0.577	-1.051	0.874	-0.063	-0.694	-1.368	-0.145	0.674	0.1	-0.649	-1.159	0.153	-0.062	-2.575
12	1.452	-3.214	-2.318	-0.965	1.153	-2.014	-4.4	0.862	1.316	-2.623	-4.4	-0.673	-0.411	-4.4	-4.4	-0.663
13	-4.4	-4.4	2.468	-4.4	-4.4	-4.4	-1.507	-4.4	-4.4	-4.4	-2.318	-4.4	-4.4	-4.4	1.319	-4.4
14	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	2.753	-3.124	-2.243	-4.4	-4.4	-4.4	-4.4	-4.4
15	1.109	-1.259	-2.238	2.51	-3.124	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-2.243	-4.4	-4.4	-4.4	-4.4
16	1.027	-2.02	-2.644	-2.279	-1.259	-4.4	-4.4	-4.4	-2.238	-4.4	-4.4	-4.4	2.386	-2.62	-2.67	0.35
17	2.399	-0.764	0.769	-0.868	-2.006	-4.4	-3.174	-3.185	-2.308	-3.199	-4.4	-4.4	0.147	-4.4	-1.013	-4.4
18	0.727	1.399	1.766	-0.814	-1.656	-1.355	-3.211	-3.167	-0.795	-0.108	-0.054	-1.279	-4.4	-2.256	-1.031	-4.4
19	-0.164	-0.944	0.173	-1.215	0.849	-0.31	-1.153	0.655	1.252	0.257	0.574	-0.476	-1.04	-4.4	-1.007	-3.106
20	0.749	-0.392	0.703	0.8	0.422	-0.785	-1.339	-1.691	0.667	-0.422	-0.263	-1.298	-3.135	-1.516	0.834	-1.132
21	-0.095	-0.083	0.026	1.021	-0.235	-0.884	-1.668	-0.486	0.955	-0.022	0.045	-0.315	-2.197	0.819	-1.239	-1.088
22	0.9	-0.064	-0.414	-1.043	0.346	-0.762	-1.12	0.864	-0.461	0.104	-0.633	-1.274	-0.836	0.868	0.089	-0.597